RNA id: TU221460


Basic Information

Item Value
RNA id TU221460
length 1148
lncRNA type read_through
GC content 0.42
exon number 2
gene id LOC120544552
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4606736 ~ 4694616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGGTTCAAGCCTGAACTACAGACACAAGTATCTGCGATCAGAAATGTTCACTTTAGACTTTTTGGAGAGTTAAACTGTGATTGATGATGAGAAAACATTTCAGAAACGGCATATTATTTTAGTATTCttcatattttgaatattttggCCTGAGCAGCGATGCCTAAGGGTCCCAACGTGTTtagtcactcagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacacagagaaacacacacacacacacacacacacacacaacaacgTTCTCTGCAAGTACAATTACTGATCACTGCTCTCTTTGAATTTTGAgcgttttatttaattttttagcatttgagAAAACGTGTGAATGGTTTAAAGGTACCGTGACTCAGCGTAGACACACAGTCTCTGACTACCCATCAACACACCTTCCTCTAATATTACTCACAATTATTCATCATTTcagctttgtttttttactgaaaaataAGGTATAACTTCATATACACGAGGTTTCTTGACCATGAACTCCAAAAAATAAGAAACTTTAGTGGTTAGAAGTTGGTGTTGGTGGTAGTGGAAGTGAGAAAATGTGTCTAAAACATtgcaaaaagggacaaaaatgtcagaaagtgtCAAAGTCAACGAAAAAAATcgtcaaaaatgtgttttaaaagggTTAAtctgtaatcttctgcatgtgtgtgttgctgtgtgtccctgtgtgtgttacaagcatagtgtgtgtccctgtgtgtgttacaagcatagtgtgtgtgcgctgtgtaCGAGCCTagcagcattttactaatgctctgttaaaataacaatgaaatgctgcgttattgactttagaccaggtttttgttggtcaatggtgccatcacttcccgctgcaTCAAGATAACaattctcccagaatgcacctgaacacacctccctgtaagaccagcgcgcccagaatgtacctgaacacacctccctgtaagaccagcacgcccagaatgtacctgaacacacctccctgtatgaccagcacgcccagaatgcacctgaacacacctccctgtaagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221439 lncRNA downstream 56924 4564029 ~ 4583587 (-) True G163390
TU221418 lncRNA downstream 59608 4559504 ~ 4580903 (-) True G163377
TU221419 lncRNA downstream 59608 4560029 ~ 4580903 (-) False G163377
TU221420 lncRNA downstream 60151 4559504 ~ 4580360 (-) False G163377
TU221423 lncRNA downstream 60151 4559504 ~ 4580360 (-) False G163377
TU221482 lncRNA upstream 15970 4692762 ~ 4704786 (-) True G163415
TU221502 lncRNA upstream 125917 4802709 ~ 4815755 (-) True G163422
TU221504 lncRNA upstream 129698 4806490 ~ 4814371 (-) True G163423
TU221526 lncRNA upstream 212843 4889635 ~ 4889841 (-) True G163444
TU221529 lncRNA upstream 225271 4902063 ~ 4902317 (-) True G163447
XM_039778434.1 mRNA downstream 12129 4627154 ~ 4628382 (-) True LOC120544566
XM_039778444.1 mRNA downstream 35868 4604055 ~ 4604643 (-) True LOC120544576
XM_039778435.1 mRNA downstream 37516 4601695 ~ 4602995 (-) True LOC120544567
XM_039778447.1 mRNA downstream 145624 4494519 ~ 4494887 (-) True LOC120544579
XM_039778436.1 mRNA downstream 147180 4492120 ~ 4493331 (-) False LOC120544568
XM_039778430.1 mRNA upstream 40228 4717020 ~ 4750395 (-) True LOC120544564
XM_039778431.1 mRNA upstream 40228 4717020 ~ 4723954 (-) False LOC120544564
XM_039778432.1 mRNA upstream 40228 4717020 ~ 4723800 (-) False LOC120544564
XM_039778427.1 mRNA upstream 58422 4735214 ~ 4750430 (-) True LOC120544563
XM_039778429.1 mRNA upstream 58422 4735214 ~ 4739929 (-) False LOC120544563
TU221394 other downstream 147160 4491005 ~ 4493351 (-) True LOC120544568
TU221291 other downstream 225080 4334843 ~ 4415431 (-) False G163315
TU221281 other downstream 225080 4367059 ~ 4415431 (-) False G163315
TU221286 other downstream 238770 4366499 ~ 4401741 (-) True G163315
TU221342 other downstream 336463 4302566 ~ 4304048 (-) True G163334
TU221486 other upstream 58536 4735328 ~ 4740789 (-) False LOC120544563
unassigned_transcript_924 other upstream 79869 4756661 ~ 4756732 (-) True trnad-guc_9
unassigned_transcript_925 other upstream 81646 4758438 ~ 4758509 (-) True trnad-guc_10
unassigned_transcript_926 other upstream 84634 4761426 ~ 4761496 (-) True trnag-gcc_2
unassigned_transcript_927 other upstream 85270 4762062 ~ 4762132 (-) True trnag-gcc_3

Expression Profile