RNA id: XM_039778415.1


Basic Information

Item Value
RNA id XM_039778415.1
length 2637
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC120544552
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4606736 ~ 4694616 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagagagagagagtctctcGTGAGAGAAAGATGAATTTtcgtgtctctttttttcttgtcttaaCTCGGAACTTTCCCACATTAAACACGTGGACCATAAAAGGACACAGAGATCCGTGACCCGCTACTGAAGCAGCCGTTTAACCCGAGGAGGAGCTCCAACGGCCGGCACGAGGCTTGTTTGTTTGACCGCGCGGGGACACCGAGCTGACCCGATCCTacacctgctgctgctctcgCGCCTCCCGCGTAAACCGAGCCCGGCACGAGCTGCTCCTCTCAGCCATGGGGTTAAATCTCAAACATGAGCGCTATCATCAGGTTCACTTTTTACGGATTTTTACCGGAAAACATTCGGATTTTTTAAACGTTAAAGAGCCGCGAGGACCGTTAAACTGCTGCTGAGACACTGAAGAGAAAACACGGAGATTATAGCTGCTGGATCTGTCAAAGTAGGTCCTAACGGTCACGGtccagtttgtttttaattaaatatttatggTTTTAAGTTAATTTAAACGAAAATAACCGTGAagaaaccgtttttttttttaaacacatagaTTATAGCTGGTGAATCTGTCAAAGTAGGTCCTAATGGTCACAGtccagtttgttttttaatgaaatatgtATGGTTTCAAGTTAATTTAAACGAAAATAACTGTGAggaaaccgtttttttttttaacacagattattgctgctgaatctgtcaaaGTAACTGTCCCAgtacatttcttttaaattaaataaggtagcctacaaaaaaaataaaataaataaataaaccgttttttttttttaaacacggAGATTAGCTGCTGTCTTTGTCCCATAATCTCTCAAAGTAAcggttattttttcttcttctattagCCTAAATAGGCATTTTCCATGGTTTAAAGTGAATGTGGAAGAAAACAACCGTTAAgaaaccgtttttttttctctctgctatAATGAGTCTGTGGACTAACGGCTCCTCCGCGGATCTTAACGTCACTATGAGTCTGTGGACTAACGGCTCCTCCGCGGATATTGACGCCGGGACTCAGCGTCAACCGCCCGGCTCCAACTCCTCCAACAGCACCAACGGCTCCCGGCACGACGCCGCCCCGCTGGACCTGAGTCGGGCGGTGCCGGTGGGCATGGTGCTGGCTTTCTTCATCATGTTCGCCATCGTGGGGAACATCCTGGTAATCCTGTCGGTGGTTTGTAACCGACACCTGCGGATCCCGACCAACTACTTCATCATCAACCTGGCCATCGCGGACCTGCTGCTGGGAACCACCGTGCTGCCGGTTTCCGCCACGCTGGAGGTCCTGGATTACTGGGTGTTTGGGCGGATCTTCTGTGACATCTGGGCAGCTGTGGACGTGCTGTGCTGCACGGCGTCCATCATGTCTCTGTGCGTCATCTCCATCGACCGATACATCGGCGTGCGCTACCCGCTGCAGTACCCCACCATCGTCACCGAGAAGCGGGCGCTGCTCGCCATGCTGGGCGTCTGGATCCTCTCCATCGTCATCTCCATCGGCCCGCTGCTGGGCTGGAAGCAGACGCCATCACAGGACGCCACCGAGTGCGCCATCACCCAGGAGCCGTTCTACGCCCTCTTCTCGTCGCTCGGCTCCTTCTACATCCCGCTGGCCGTGATCCTCGCCATGTACTTCCGCGTCTACGTCGTGGCCAAACGCACCACCAAGAACCTGGAGGCCGGCATGATGAAGGAGCGCATGGCGGACTCCAACGAGCTCACCATGCGGATCCACTGCCGCAGCCAGCAGATCCAGGAGCTGTGCCCCGCCAACGCCAACGCCAACGCCGGGGGCGGGGCTTCGGCCGCACGCAGCTCGCTCACCGTCAAGCTGCTCAAGTTCTCCCGGGAGAAGAAGGCCGCCAAGACGCTGGGCGTGGTGGTGGGCATGTTCATCCTCTGCTGGCTGCCCTTCTTCCTGGTGCTGCCCATCGgctccTTCAACAAAGATCTCCATCCTCCTCCTACTTTATTTAAAGTTATATTCTGGTTGGGATACTTCAACAGCTGCCTGAACCCCATCATCTACCCCTGCTACAGCCGCGAGTTCAAGCAGgcgTTCATCAGGATCCTGCGCTGCCGCTGGAAGAGGAAGCGCCAGGGCTGGCAGGCGTACTACAACTACCGGCGCCAAGAGGGCTCGCACGCCACGTCCATCCTGAACGGCAGCCAGCAGACGCTGGCGTCCGTCGGCCCCAGCCCGCGCTGCGTGGCCTCCAGGCTCCGCCCCCCCTCCTCCAGGCTCCGCCCCGCGTCCACGCTCGCCGAGGGTCCCGGGACGCCAGGGCTCGGCACGGGCGCAGACAGAAGCGCTAACTGATATACACACAGCCTGCCGCTCACAGGAAGTGGCtgttctttttaaaaacacGCACAGGTGTCACCGATGACATCACGAGACGCTCTGCTCGCTCACGGAGGAGACGGAGGAGTGTTAGGACCGTCCTCGGCATCGAACCTCCGGCTGTGCTCGGCGCATTCTCGGCCTAaaccctttttaaaatgtctatatcagaaatatgggtttctttttaatcacattacccacaaactctcacacacacacacactcacacaatcacgcacacacac

Function

GO: NA

KEGG:

id description
K22790 Octbeta; octopamine receptor beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221439 lncRNA downstream 58250 4564029 ~ 4583587 (-) True G163390
TU221418 lncRNA downstream 60934 4559504 ~ 4580903 (-) True G163377
TU221419 lncRNA downstream 60934 4560029 ~ 4580903 (-) False G163377
TU221420 lncRNA downstream 61477 4559504 ~ 4580360 (-) False G163377
TU221423 lncRNA downstream 61477 4559504 ~ 4580360 (-) False G163377
TU221502 lncRNA upstream 108093 4802709 ~ 4815755 (-) True G163422
TU221504 lncRNA upstream 111874 4806490 ~ 4814371 (-) True G163423
TU221526 lncRNA upstream 195019 4889635 ~ 4889841 (-) True G163444
TU221529 lncRNA upstream 207447 4902063 ~ 4902317 (-) True G163447
TU221532 lncRNA upstream 248560 4943176 ~ 4943391 (-) True G163450
XM_039778434.1 mRNA downstream 13455 4627154 ~ 4628382 (-) True LOC120544566
XM_039778444.1 mRNA downstream 37194 4604055 ~ 4604643 (-) True LOC120544576
XM_039778435.1 mRNA downstream 38842 4601695 ~ 4602995 (-) True LOC120544567
XM_039778447.1 mRNA downstream 146950 4494519 ~ 4494887 (-) True LOC120544579
XM_039778436.1 mRNA downstream 148506 4492120 ~ 4493331 (-) False LOC120544568
XM_039778430.1 mRNA upstream 22404 4717020 ~ 4750395 (-) True LOC120544564
XM_039778431.1 mRNA upstream 22404 4717020 ~ 4723954 (-) False LOC120544564
XM_039778432.1 mRNA upstream 22404 4717020 ~ 4723800 (-) False LOC120544564
XM_039778427.1 mRNA upstream 40598 4735214 ~ 4750430 (-) True LOC120544563
XM_039778429.1 mRNA upstream 40598 4735214 ~ 4739929 (-) False LOC120544563
TU221394 other downstream 148486 4491005 ~ 4493351 (-) True LOC120544568
TU221291 other downstream 226406 4334843 ~ 4415431 (-) False G163315
TU221281 other downstream 226406 4367059 ~ 4415431 (-) False G163315
TU221286 other downstream 240096 4366499 ~ 4401741 (-) True G163315
TU221342 other downstream 337789 4302566 ~ 4304048 (-) True G163334
TU221486 other upstream 40712 4735328 ~ 4740789 (-) False LOC120544563
unassigned_transcript_924 other upstream 62045 4756661 ~ 4756732 (-) True trnad-guc_9
unassigned_transcript_925 other upstream 63822 4758438 ~ 4758509 (-) True trnad-guc_10
unassigned_transcript_926 other upstream 66810 4761426 ~ 4761496 (-) True trnag-gcc_2
unassigned_transcript_927 other upstream 67446 4762062 ~ 4762132 (-) True trnag-gcc_3

Expression Profile