RNA id: XM_039826353.1


Basic Information

Item Value
RNA id XM_039826353.1
length 4344
RNA type mRNA
GC content 0.51
exon number 5
gene id smg8
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8451577 ~ 8465799 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaagaagttAAACATTTGAGCGAGTTATCTGCAGCATTCCATTCAGTTATCACGGATCTGTGCATTCCAGAGAACGTTCGATTTCAACGTTCAAAGTAAAGTGGTCGTTGCACTAATAGTGTTCTCTGCCAGCGTTGTTGTTTTAATTGAAGGAATGGATTTTCCAGATTCTCTTGGcatgattgtttttattttcagttctggtttgaattttaaatgaaaatcattATTCACAATTAAGCAGTTGTGTTCTTATTTTTGATAATACAGTGTGACAATTTACCCGGCGCAATATTCAACAATCCACAACTCCATAATGAGGTAAGTTATGAAGATgtaattaatacaaaatatgagCCCAAGAATTGCTTCTTTCATTTGGTATGACATTTATACCATTGTGACGGTGTGAAAAGAGTGATTGACAACATACCCCGCTCTGATATAATTCTTCCACTAATGGGTGAAACAGTAAAACAAAAGGGGAACTGCAACGCGTATGTTGTATCTACTCGGACGTTTTAGTTTACGAAACCGGAAATGCGTGCGTCGTTGTTTTTCTTCCCCCGATTTTCAAGATGAAGGAAGTAAACATGTCTTTCCCTGTGAGTATGGGGGCTCTGCTTAAGGCAGACCTCCAGGAGGACGCTGCTAGCCGGGACGAGGGCTTGTGTGTTGTCGGTATTTTCGGTAAAAGCAACATGCAGCCCGGACCGCCGAAGGAGTCTATTATCAACAATTTGGCGGACAAACACATCTTCTCGCTGTTCGGCGGACCGGAGGACGGCGGCACCGCGGACAGCCACATCCAGGCTTTCTACAGCCAGGAGAGCCGGGTGCTGTACctgctgctctcctccgtctgcGACAGCCGGCAGCTGCTGCGGGCCTGCGAGTCTCTGAGCGCCGCCACCGGCCACTCCGACGCCCACGACTTCTGGAAAGGCCTGGACCGACAGCACTGCCTCCATCTGCTCTACATGTTCTCCGTGTGCCACGTCCTCCTGCTCGTCCACCCCAACCAGACCTTCGATGTGACCTACGACCGGCTCTTCAGAGCCCTGGACGCCCTGCGACAGAAGGTGCTGCCTCTGATCCGAGCTGCCATCAAAGACTGTCCGGTGTCCAAAGAGTGGAAGGTGAACTGTCGGCCCTGCCCTCCACGCCTGCTCTTCGTCTTCCAGATGAACGGCTCTCTGAAGGTCTCTGCAAACGGTTCAGAGTCTGGGGGAAACCCAGACAAGCCCAAAAAGCACTCTCCCAGGAGGAGGTTGCAGCATGCCCTGGAGGACCAAATTTATCGGATCTTCCGTAAAAGCAGAGTCCTGACCAACCAGAGCAGCAACTGCTTGTTTACTGTGCCCGCCAACCAAGCGTTTGTGTACGTGATACCGGCAGTAGATGAGGACCCAGTGGGTGCCCTGCTTGGTCAGCTGCGGTCCAACTGCATCTTGTGTGAACAAGACACCGTCACGGTGGTGTCAGGGCCGAGGCGCTATCAGCAGATGCGACGTTCAGTTCGGCAGTCCAGCTTCGGCGGAGATCCAGGCAGCATGTCGATGGGCGGTCAGCTGGTGGACTGCAGCCTGAAGGAATTCCTCTGGCAGCACGTGGAGCTGGTGCTCACCAAGAAAGGCTTTGACGACAGCGTCGGCCGCAACCCACAACCTTCCCACTTTGAGCTGCCGACCTACTCCAAATGGGTCCAGGTCGCCTCCAGGCTCCACCAAGTCCTGATTAGCAACACGGAAGAAGAATTAGCCGAGCTAGCCACGAAAGTGCAAGCCCAGCTGAAGGttttggaggcttttctcgATGCTGACACAAAGTTCTCTGAGAACAGGTGCCAGAAAGCTCTGCCACTGGCTCACAGCGCTTACCAGTCCAATCTTCCCCATAACTACACCACTACGGTGCACAAAAACCAGCTGGCGCAGGCTCTGCGAGTGTACAGCCAGCATGCCCGAGGAGTCGCTTTCCAGCGCTATGCACTGCAGCTTCATGAGGACTGCTACAAGTTCTGGAGCAACGGCCACCAGCTGTGTGAGGAGCGAAGCCTGACTGACCAACACTGTGTTCACAAGTTCCACCTTCTTCCTCAGCCAGGAGAGAAGCCAGACCTGGATCGCAATCCACCAATCATGAACcacaacagcagggggcgctccACCAGCTCCTGTAACTGCGGCAGGAAACAGGCTCCTCGTGAGGATCCGTTTGACATCCAGGCTGCCAATTATGACTTCTACCAGATACTGGAGGAGAAATGCTGCGGGAAGCTGGAGAGGATTGAGTTTCCGGTGTTCCAGCCCAGCACTCCTGACCCAGCTCCGGCCTGCAACCAAGCTCAGCGACTCCCGAGTGAGGCCTCAGGGTCTGGTGAGGCGGAGAGGCTGAAGGAGCCAAGCACTGCTCAGAGCCACACACCTGGAGACCCCAGCCTCAGCCTGGCTCTCAGTCTAGGCCAGTCCACGGACAGCCTCGGGCCCTACGCGGACGGAGATGGCACCGAAACCCAAGTCCAGCAAAAGAGGCCAAGCCTTGTTGACCGCCAGCCCTCCACTGTGGAGTATCTCCCGGGTATGATGCACTCTGGGTGCCCCAAGGGCCTGCTACCCAAGTTCTCCAGCTGGTCGCTAGTCAAACTGGGCCCAGCCAAGTCATACAACTGCCACACCGGTCTGGAACAGCCGGGCTTCCTACCCGGCTCCTCCTTCCTCTTGCCGTGGGACTTGGTGATCCGCTCTCGGTCGGAGGAGGACACCGGACTGACGGAGCCTTTGGATGGAGGCACCTCCTCGTGGCCAGCCCCAAACAAGACCCTGGTGGGAAAGCGAGGGAGCACCGGAGGGCTCGGTAGGAGTCGCAGGAGGGATGACATGGCTCGGATCTTCGTGGGGTTTGAGTATGAAGACAGCCGAGGAAGACGCTTCATCAGCTGCGGGCCGGATAAGATAGTGAAGGTGCTGGGGCCAGGGGGCGCCAAAGAACCGGCCACCAGGGTGCTAAACACCGACATGCCGCTGAACATCCAGTCCCCTTCACAGGGCCGCGGCCTGAAGCCTCACTTCGCCCAGCTGGCtcgcctttttattgtggtgccGGACGCCCCACTGGAGGTTACCCTCAACCCACAGGTACTGCCCAGTCCTCCTCCCTGCCCAGTTTTCCACCCAGAGAAGACAGATATAGTGTTGCCACCTGATGGTCTTTGGGTTCTGCGGTTCCCTTATTCCTACGCAACAGATCGTGGCCCCTGTTACCCCCCCAAAGAGAACCAACCACTCAACAACTACAAGGTGCTGCGAGGCATCCTGAAGGCCACGACTGCTAACCCTCCACCACAGTAAACTTAAACCTTTCACAGTATGAaggctttattatttattcaggCTTCCTGATGTAGgctgagaaatgttttttttttgtcagtccGTGACCCCCAGACCTCATCAGGTCAAAATCAGGTTGGATTTCCTGTAAAAGAACTGTTGATATTCACAGTTGCTACACATTAAATCCCATTGATTTTGATGATCTCTAAAAGTTTTGCTGCATAATTCAAACAAATTTATTTTCATGCTCCCAGAAGAAGAACACATTCTGCACTGCCATCCAAActttaaaccccccccccccatttctgTAACTTTCCGTGGCCAGCTTACGTCATGGTTTTGGAAAAGCTCTATTTACCCCATACAAACTCAAACACCAAGCCAACGTTTGAAGGTGTACAGGTTTTGGAAAAGCATAATGTGGACGTACAGTAGCAAATAACAAAGGTCAGCAGCATTGAGCTAGAGTAGCCAATAAAACAGAGGCGAAAGTCGAGTGTCAGTAATTAGGCTAAACTAATGTGTATTCTGCACCACTTTACTTTAAGTCCACCTATTTAGCATTTATTAGCAGtatataaacatttaataaacggtctataacacactataatgtagttgtatgcagatataattatttattaatgtatttgtaaACAACCTCTTGTGGGCTCACATAAGTGGAAGCTGCTGTACAAACATAAGTTATGACAATATAGTAAAACGTGTAATATGAAGTATCTTCATAGGAGAAGTTATAATTGCTGACGAATATTAATAACCTCATATCTGCGTACAACTACATTGTAGTGTGATATAAACCTTTTAATTAAAGGTTTGTGCGCTGCTTGTAAGGACAAACTAGGGAAACCTCCAGTAAAGTGTTACCTGTATTCTGCATCATGTGTAGTATGGTATCCCAACACAAGTATCCTACTACTATTACAATGATTACTGTACATGTTCATGTtttctataaataaaaataattgtttgccattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222313 lncRNA downstream 37908 8375222 ~ 8413669 (-) True G164032
TU222312 lncRNA downstream 38920 8411409 ~ 8412657 (-) True G164031
TU222324 lncRNA downstream 49233 8400979 ~ 8402344 (-) True G164042
TU222319 lncRNA downstream 60832 8388362 ~ 8390745 (-) True G164038
TU222301 lncRNA downstream 83489 8366403 ~ 8368088 (-) True G164027
TU222379 lncRNA upstream 1504 8462478 ~ 8462795 (-) True G164085
TU222373 lncRNA upstream 38791 8499765 ~ 8510059 (-) True G164079
TU222497 lncRNA upstream 166823 8627797 ~ 8630886 (-) True G164175
TU222519 lncRNA upstream 260136 8721110 ~ 8724296 (-) True G164188
TU222524 lncRNA upstream 274405 8735379 ~ 8737503 (-) True G164193
XM_039826494.1 mRNA downstream 2315 8445118 ~ 8449262 (-) True kcnj15
XM_039778675.1 mRNA downstream 10373 8428416 ~ 8441204 (-) True vps26c
XM_039777953.1 mRNA downstream 71002 8368495 ~ 8380575 (-) True rabgef1
XM_039776700.1 mRNA downstream 118507 8315778 ~ 8333070 (-) True si:dkey-183i3.6
XM_039776924.1 mRNA downstream 173489 8259787 ~ 8278088 (-) False rab24
XM_039777719.1 mRNA upstream 51200 8512174 ~ 8543503 (-) False trim37
XM_039777716.1 mRNA upstream 51200 8512174 ~ 8543503 (-) False trim37
XM_039777718.1 mRNA upstream 52725 8513699 ~ 8543503 (-) True trim37
XM_039777954.1 mRNA upstream 117096 8578070 ~ 8594221 (-) True slc37a2
XM_039826352.1 mRNA upstream 134513 8595487 ~ 8603766 (-) True ccdc15
TU222314 other downstream 71031 8375892 ~ 8380546 (-) False rabgef1
TU222295 other downstream 99072 8346828 ~ 8352505 (-) True G164022
unassigned_transcript_942 other downstream 159059 8292407 ~ 8292518 (-) True trnal-caa_12
unassigned_transcript_941 other downstream 469506 7982000 ~ 7982071 (-) True trnad-guc_16
TU221956 other downstream 1165312 7257138 ~ 7286265 (-) True G163767
XR_005636462.1 other upstream 51200 8512174 ~ 8543503 (-) False trim37
TU222503 other upstream 176740 8637714 ~ 8639161 (-) True G164179
unassigned_transcript_944 other upstream 290850 8751824 ~ 8751912 (-) True trnay-gua_53
unassigned_transcript_945 other upstream 291304 8752278 ~ 8752363 (-) True trnay-gua_54
TU222956 other upstream 2022669 10483643 ~ 10489164 (-) False LOC120543909

Expression Profile