RNA id: TU222484


Basic Information

Item Value
RNA id TU222484
length 434
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G164162
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8696445 ~ 8696878 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTGAAGGTGTAAACTCGAAACAGCAAGAatcaaatacaataaatatattagcttcaataagccaaactacaaagtCGTACATAAgtgcaattcttttttttctttttttttatatatatagccATCATCTTCTTAGCCAAGGTGTGTTCTCAGCCTGCAAGGGAAGATGTTTAAACTTTCAGCTGTCCTGATGTCAAttgggagctcgttccaccatttaggagccaggacagcacaGTTGGGATTTGGTTGAGTGATTAGGTGTCCCTCGCAGTGAGGGAGCAGAAAGCAGATTTGCCAATGCAGAGCGGAGTAGATGGGCTGGGGTGTATAGTTtcaaggtcccatgacatggtgctctttggatgcttttatatagactttagtggtcccctaatactgtatctgatctctcttttatatagaccttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222463 lncRNA upstream 14391 8680133 ~ 8682054 (+) False G164156
TU222471 lncRNA upstream 14391 8680133 ~ 8682054 (+) False G164156
TU222472 lncRNA upstream 14391 8680133 ~ 8682054 (+) False G164156
TU222441 lncRNA upstream 59400 8636831 ~ 8637045 (+) True G164136
TU222440 lncRNA upstream 62137 8634060 ~ 8634308 (+) True G164135
TU222485 lncRNA downstream 1354 8698232 ~ 8698973 (+) True G164163
TU222550 lncRNA downstream 107006 8803884 ~ 8804190 (+) True G164208
XR_005636510.1 lncRNA downstream 242935 8939813 ~ 8944602 (+) True LOC120544514
TU222610 lncRNA downstream 268504 8965382 ~ 8965767 (+) False bckdk
TU222609 lncRNA downstream 288759 8985637 ~ 8987592 (+) False bckdk
XM_039778099.1 mRNA upstream 65584 8628410 ~ 8630861 (+) True LOC120544397
XM_039826492.1 mRNA upstream 127870 8545217 ~ 8568575 (+) True pou2f3
XM_039826355.1 mRNA upstream 186362 8463580 ~ 8510083 (+) True ppm1e
XM_039777316.1 mRNA upstream 273934 8388467 ~ 8422511 (+) True ttc3
XM_039778349.1 mRNA upstream 309688 8382947 ~ 8386757 (+) True LOC120544532
XM_039778670.1 mRNA downstream 14383 8711261 ~ 8719239 (+) False mks1
XM_039778669.1 mRNA downstream 14385 8711263 ~ 8719239 (+) True mks1
XM_039777142.1 mRNA downstream 24161 8721039 ~ 8745957 (+) True ap2b1
XM_039777144.1 mRNA downstream 24161 8721039 ~ 8745957 (+) False ap2b1
XM_039777145.1 mRNA downstream 24161 8721039 ~ 8742338 (+) False ap2b1
TU222462 other upstream 14391 8680133 ~ 8682054 (+) True G164156
TU222229 other upstream 401165 8292751 ~ 8295280 (+) False LOC120575583
TU222216 other upstream 496333 8197845 ~ 8200112 (+) False LOC120544209
TU222165 other upstream 618752 8074947 ~ 8077693 (+) True G163932
TU222143 other upstream 705816 7984995 ~ 7990629 (+) True G163910
unassigned_transcript_943 other downstream 54150 8751028 ~ 8751113 (+) True trnay-gua_52
TU222904 other downstream 1511293 10208171 ~ 10208658 (+) False G164466
TU222910 other downstream 1511293 10208171 ~ 10208658 (+) False G164466
TU222911 other downstream 1511293 10208171 ~ 10208658 (+) False G164466
TU222912 other downstream 1511293 10208171 ~ 10208658 (+) True G164466

Expression Profile