RNA id: TU222809


Basic Information

Item Value
RNA id TU222809
length 424
lncRNA type sense_over
GC content 0.54
exon number 5
gene id G164391
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10109662 ~ 10113224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCTGCCATGCCTGCCAGTAATCCCAGTGCTAGATGCTCCGCCACTCCATCAAATGGGTCCCTTTGAACAACCACCTGGTGGGTTCCTGGTCCCGCTCCAGGTGTGATGTAGACAGTATGGTGGCTGTTGATAGGGACAGCTTGGTAGGAGTCATCGTATGGGTCGTACGTGAACACCGGGTTTCTCCTGGTGTCAAGCAGAGTCAGTTTCCACGCTATGGATTCATCCTCGCTGTTGGCACACAGGTTGACTGACGAGCCGCTTGCGAGCTGAACCACAATGAGATTCTCCCTGGGATTACTCTCTGGTGGAGTCGCACCTTCACATTCCAGGCCAGATCTGACATCTATGCATGCTGTCTTGAGGCTGATGCGATGCTCCAGGTCTCGCCTGCTGTCGGTCTTATAGAAGCAAAGACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222794 lncRNA upstream 441864 9666836 ~ 9667798 (+) True G164384
TU222712 lncRNA upstream 790694 9305706 ~ 9318968 (+) True G164339
TU222705 lncRNA upstream 834249 9268878 ~ 9275413 (+) True G164336
TU222810 lncRNA downstream 16276 10129500 ~ 10130167 (+) True G164392
TU222855 lncRNA downstream 42116 10155340 ~ 10155777 (+) True G164427
TU222853 lncRNA downstream 47901 10161125 ~ 10161841 (+) True G164425
TU222894 lncRNA downstream 85781 10199005 ~ 10199899 (+) True G164462
TU222908 lncRNA downstream 94947 10208171 ~ 10208658 (+) False G164466
XM_039778507.1 mRNA upstream 2295 10099871 ~ 10107367 (+) True LOC120544618
XM_039777288.1 mRNA upstream 33370 9661922 ~ 10076292 (+) True cadm1a
XM_039777290.1 mRNA upstream 33370 9661922 ~ 10076292 (+) False cadm1a
XM_039777291.1 mRNA upstream 33370 9661922 ~ 10076292 (+) False cadm1a
XM_039777292.1 mRNA upstream 33370 9661922 ~ 10076292 (+) False cadm1a
XM_039778516.1 mRNA downstream 5384 10118608 ~ 10135925 (+) False tecta
XM_039778519.1 mRNA downstream 5411 10118635 ~ 10178772 (+) True tecta
XM_039778515.1 mRNA downstream 5425 10118649 ~ 10135925 (+) False tecta
XM_039778514.1 mRNA downstream 5430 10118654 ~ 10135925 (+) False tecta
XM_039778517.1 mRNA downstream 5430 10118654 ~ 10135925 (+) False tecta
unassigned_transcript_943 other upstream 1358549 8751028 ~ 8751113 (+) True trnay-gua_52
TU222462 other upstream 1427608 8680133 ~ 8682054 (+) True G164156
TU222229 other upstream 1814382 8292751 ~ 8295280 (+) False LOC120575583
TU222216 other upstream 1909550 8197845 ~ 8200112 (+) False LOC120544209
TU222165 other upstream 2031969 8074947 ~ 8077693 (+) True G163932
TU222904 other downstream 94947 10208171 ~ 10208658 (+) False G164466
TU222910 other downstream 94947 10208171 ~ 10208658 (+) False G164466
TU222911 other downstream 94947 10208171 ~ 10208658 (+) False G164466
TU222912 other downstream 94947 10208171 ~ 10208658 (+) True G164466
TU222990 other downstream 447419 10560643 ~ 10562266 (+) True G164531

Expression Profile