RNA id: TCONS_00006881


Basic Information

Item Value
RNA id TCONS_00006881
length 1517
lncRNA type lincRNA
GC content 0.38
exon number 4
gene id XLOC_003513
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28517562 ~ 28520764 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acccagccggcacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgttgctttaatgttgaaacaatgttgaatgataaatggttgaaaaaagttacagaaatccttgtacaaatcaacgttgacattttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattactaacacctgacctgcagtgcagcagaattcagagacatgtaacttaacgtactccagagacgcactcacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggCATCAAGAACACGCAGATAGCATAAacctgtgtcagcctggacagactgTAGATCTGCTACTCAACGCCAAGGCTTTTGTATGCATGTCTGACTACTACAGTGTTCTTtaaaggttttctggaagctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacagtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtgaaatttgtgttcataaaagatagtgatatatgtgtaacaggtccagtacatttgtcataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctctgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacacgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaattgggaccattgctgtctgtagaggatgagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtaattaataacagaacctatatgaacacttaatgtgacatgtaatagtgaaatTTATTTACTAGGTGAATAgtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataatggaataacaaattgctattactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgataatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacaaaatagatgtactttatgcaaaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000171257

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006878 lncRNA upstream 70205 28442373 ~ 28447433 (+) False XLOC_003511
TCONS_00008625 lncRNA upstream 70567 28446313 ~ 28447071 (+) True XLOC_003511
TCONS_00006877 lncRNA upstream 70776 28442373 ~ 28446862 (+) False XLOC_003511
TCONS_00008624 lncRNA upstream 93324 28418774 ~ 28424314 (+) True XLOC_003510
TCONS_00006868 lncRNA upstream 773356 27738489 ~ 27744282 (+) True XLOC_003507
TCONS_00008626 lncRNA downstream 12460 28533224 ~ 28537315 (+) False XLOC_003514
TCONS_00008627 lncRNA downstream 12460 28533224 ~ 28588634 (+) False XLOC_003514
TCONS_00008628 lncRNA downstream 12460 28533224 ~ 28594476 (+) False XLOC_003514
TCONS_00008629 lncRNA downstream 26270 28547034 ~ 28616959 (+) True XLOC_003514
TCONS_00008630 lncRNA downstream 116698 28637462 ~ 28643700 (+) True XLOC_003517
TCONS_00006879 mRNA upstream 2660 28476298 ~ 28514978 (+) True XLOC_003512
TCONS_00006876 mRNA upstream 93452 28218141 ~ 28424186 (+) False XLOC_003510
TCONS_00006875 mRNA upstream 96544 28166165 ~ 28421094 (+) False XLOC_003510
TCONS_00006874 mRNA upstream 98653 28166165 ~ 28418985 (+) False XLOC_003510
TCONS_00006873 mRNA upstream 395184 28109403 ~ 28122454 (+) True XLOC_003509
TCONS_00006888 mRNA downstream 96800 28617564 ~ 28619811 (+) True XLOC_003515
TCONS_00006889 mRNA downstream 99919 28620683 ~ 28631342 (+) True XLOC_003516
TCONS_00006891 mRNA downstream 1016992 29537756 ~ 29540033 (+) True XLOC_003522
TCONS_00006894 mRNA downstream 1150897 29671661 ~ 29677714 (+) False XLOC_003525
TCONS_00006895 mRNA downstream 1150905 29671669 ~ 29677693 (+) True XLOC_003525
TCONS_00006865 other upstream 997065 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 1903051 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 2439577 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 3034668 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 3039220 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 831337 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 1045983 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 2451270 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 2454007 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 2494755 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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