RNA id: TU222912


Basic Information

Item Value
RNA id TU222912
length 446
RNA type TUCP
GC content 0.53
exon number 2
gene id G164466
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10208171 ~ 10208658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATGATGCATTTTTGAGGAAGCAGAAATAAGATGTTGCGTAAAGTGTGTGCTTGTATTGTACTCACCAACAGCAGCCACTCCAGCAATGGAGCCAATAGTAATACCAGCTATAGCGCCAGATGAAAGCTCCCCTGAACCTTCTTCCACAGGCCCAGGAGTGGTTGTTGCttcagtagtagtagttgtgATTGTGACAGGTGCTGCAGTAGTAGTAGCTGCGGCGGTTGTGGTTGTGGCAGGTGCTGCAGTAGTAGTAGCTGCGGCGGTTGTGGTTGTGGCAGGTGCTGCAGTAGTAGTAGCTGCGGCGGTTGTGATTGTGGCAGGTGCTGCAGTAGTAGTAGCTGCGGCGGTTGTGGCAGGTGCTGCAGTAGTAGTAGCTGCGGCACTGGTTGTGGCAGGTGCTGCAGTTGTGGATGGGCCCTGTGCTTCACCCAGGGATACTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222894 lncRNA upstream 8272 10199005 ~ 10199899 (+) True G164462
TU222853 lncRNA upstream 46330 10161125 ~ 10161841 (+) True G164425
TU222855 lncRNA upstream 52394 10155340 ~ 10155777 (+) True G164427
TU222810 lncRNA upstream 78004 10129500 ~ 10130167 (+) True G164392
TU222809 lncRNA upstream 94947 10109662 ~ 10113224 (+) True G164391
TU222924 lncRNA downstream 73462 10282120 ~ 10285258 (+) True G164475
TU222943 lncRNA downstream 266012 10474670 ~ 10475022 (+) True G164493
TU222977 lncRNA downstream 333560 10542218 ~ 10546187 (+) True G164521
TU222979 lncRNA downstream 333560 10542218 ~ 10547596 (+) False G164521
TU222997 lncRNA downstream 424811 10633469 ~ 10633682 (+) True G164537
XM_039777831.1 mRNA upstream 9657 10188886 ~ 10198514 (+) False LOC120544214
XM_039777830.1 mRNA upstream 9665 10188536 ~ 10198506 (+) True LOC120544214
XM_039778512.1 mRNA upstream 29399 10144634 ~ 10178772 (+) False tecta
XM_039778513.1 mRNA upstream 29399 10150503 ~ 10178772 (+) False tecta
XM_039778517.1 mRNA upstream 72246 10118654 ~ 10135925 (+) False tecta
XM_039777041.1 mRNA downstream 11561 10220219 ~ 10254332 (+) True tlcd3a
XM_039776964.1 mRNA downstream 47245 10255903 ~ 10273987 (+) False LOC120543746
XM_039776966.1 mRNA downstream 47245 10255903 ~ 10272862 (+) False LOC120543746
XM_039776965.1 mRNA downstream 47253 10255911 ~ 10273987 (+) True LOC120543746
XM_039776967.1 mRNA downstream 66007 10274665 ~ 10280871 (+) True LOC120543747
unassigned_transcript_943 other upstream 1457058 8751028 ~ 8751113 (+) True trnay-gua_52
TU222462 other upstream 1526117 8680133 ~ 8682054 (+) True G164156
TU222229 other upstream 1912891 8292751 ~ 8295280 (+) False LOC120575583
TU222216 other upstream 2008059 8197845 ~ 8200112 (+) False LOC120544209
TU222165 other upstream 2130478 8074947 ~ 8077693 (+) True G163932
TU222990 other downstream 351985 10560643 ~ 10562266 (+) True G164531
TU222994 other downstream 363745 10572403 ~ 10580284 (+) False LOC120544459
XR_005636532.1 other downstream 804965 11013623 ~ 11024178 (+) False rcc1l
XR_005642016.1 other downstream 2121299 12329957 ~ 12347052 (+) False LOC120575591
TU223687 other downstream 2585902 12794560 ~ 12797300 (+) True G165033

Expression Profile