RNA id: TU222924


Basic Information

Item Value
RNA id TU222924
length 3139
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G164475
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10282120 ~ 10285258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acactttacatgctaaatactgtaaacatttttttcatacattttattttattttttttactttttgttaccACAGACTGtacacttattattattttgtgttccTCGTTTAATACACTATTCAGCACCAACATGGATGACTTCAAATGCCGCATTGTGGAAGAACAAAATGAGCACCCGTTCAAGGACGAAGGAGAGATGCCCTGAGGATGTTTAGAAGATAAGATGAAAAAGGTTtagggattttatttttgtcttccaGCAGGGTTTGTATGACATTGTTATTCAGAGATGCTTTAGAGATCAAATCCACTTTAAAACAGTAAATGCGGttgcatttttatgtttaactgGTAAAACAGACATTTGTCATTTCTTGTGCCATGATTGACATCTTTTTATTGTTTCTCATCTTTTTACACATTGAATACACTTGCTATTATTACACATCAAGCTTTTTAAAACACTGATCATTATGTCAATATGAAAATAAACCATGAAATGGTTTATTGGTCATGGTCTATTACTGTAGGAATTTTgctgtaaaatgtaattttccaaCATCCGGTTTCAGATTAGATCTTTTTCTCAAAAGCAGCCAACTTGCAATGTCCTCCGAACACCCCTGTTGTTACTCTGGGTaaccattaaaggtcccatggcatgataaaaatcactttaaggttcccccagcctgcctatggtcccccagtggctagaaatggcgataggtgagatgggccgatctggaatcttctccttatgaggtcataatgggaaaggttacctcccctttctctgttttgcccgcccatgagaaagagagacatcatggcttgcaaacaagcgaaccatggcagttggtcaaggccacacccccaccctccacttcgcccccctctctcctcctcataatttaaagctacagacacagaaatggcacatactaaggaaagctcattgtgggactggcactagagccagtcccacaatgagctgaATGagaggctgtaattctgcaccaaggctgactttcgggaaagagacttcagatacagtattaggggatcgctgtggcctatataaaagcatccaaaaagcaccatgtcatgggacctttaaacactaATTAGGGGGCTTATAAATGGTTGCAAAAATGTGGTAAACAGACTGATTACTGTTACCAGTGACAGTAACATGGTTTTTAAGGGAAAAAATCATCCTGTGGTCATAGTCTTATTACTCATGTGGTCTAGCAAACTGTGATTGCATTGTACCTTTTGCTCATATGTATCAACTTCCCCATGATGCATAAATGCAATGGATGCTTCTTGCATGCTGACAATGGTAAACCACAATATGAAGTGACATATCCCAGCTGCACATAgaagtttgttttttgtcagtCACCAGGGAGGATCTTCAGCTACTTCCTCTCTACCTCATGTTTTGTATTGGAAAAAATGAGTTTTGAGTCGGAATTTACTGGCCTGAAGCCTGAGGCACAATTGTTTttgatgttaaaatgaacaacacacaacaaatgGTTTCCACAGCGcttacataaatacattttgtgctTTCATATTCACACATTCATGAAAGCCCTATGGGTCAGATGTATGAAAGATGCCTATGCACAAAAATCATTTATGTGTCACTTCCCAAACATATTTATAGTAAAGGCTGTATGCTGAGGGGCTACATCTCGCACATACATCGAAACAGCATGTATGGTTTTCTTAAAGAAGCTGAGTGTGACATAGTAaagcagaaataaaacatatgcTGAGAATTGAAATCTACTGCACAGCATAATTTTAGGTTACTAGTCAATTTCACAAAGAGTGAATGACTTTTGCAGTCCAAAcacctactgtatattatatatgtaatcAAAGGCACACTTATTTcaattaaatgaatgaattgcATTTTTCTGCATTTGTATGACCACACAGTTTCTCTTtaacatacacagacatttaTGCATCTGACCCCAGATATCCTGAAATGTGTTCTGAGTTTACAATGTGTTTATTAATTGTGAATATTGCCCTCCATTTATTGTTATTGATCAAATTTaaggaaattattttttgtatgcTACATTAATGCCATATTTTTATTACCTTGATATGTTTATTAAGAATTTTGAGCCAAACCTGTGGCTCATTTACAGccctgtataaataaataaataaacacatgcaATAGTTTTAAGTCCCCATATTCCATGTTTCTTTGTTAAGGTGAAATATTTGAATTAAGCTGATAAAAGTCAGCTGTGAAACTACATAATTCACTACTAGCACAGTGCCTGTAGACGTGGGTATATCGGTGACCAACACTAAATGACTGTTAGTGACAACAGTGCAATAGTTAGGAAGTGTACTGCTGCAAATGTGTCAGTAATTTTGAGGAAGTagaatcctttaaaaaaaatcaaaacactgCATGTCACATATTGTTTCAGGAATTTTAAATTATCTATTGTATAATTTGTAATGACAAACCCACAAAAATACCAAATTTTAAACTGAAAATGCGATGTCATTGTCAAGTGTagttattttacataattttacATCTATtggatataaaaaaagaagatgtttttatggtggCCATGGCCACATTTTCCTGCAGTCATTCTGTACTGGTaccacttattttttaaaggtttttgtaATTTGTTGTAATGCCTTTATGCAAAGTGTTCATTGAGTATTCCATTCAGATGAATAGCACTGAACTCTCACTAATTGTTGCCTTTTAGAGAAAATATTCTCATTTCATAGTCATGAAATTATTGTAACTGAGCTGTGCCACAGCAGTTAGTTGAAGACCAATGAATACTTAAAAACTGTTTTATACGATACCACTGATGATTCTACAATGTGCACCTTATCTCCTCTACAGCTCaagaaaaaacacatcaagTATCATCATGCCAAATGTTTAAttgttcttttagttttttttttgcagtgatatatttttgtttttgtgccaTTTCACCCCTTGCTTTAAAGAGGACAGAAACAAGCCAAAATAGAACTATTTTTTTAACGAGATTGTACAATGTGTCAAAATGTtatgaaaatatatttgaagttaaaatgtaggcctacctTTT

Function

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0071824 protein-DNA complex subunit organization biological_process
GO:0034728 nucleosome organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222908 lncRNA upstream 73462 10208171 ~ 10208658 (+) False G164466
TU222909 lncRNA upstream 73462 10208171 ~ 10208658 (+) False G164466
TU222894 lncRNA upstream 82221 10199005 ~ 10199899 (+) True G164462
TU222853 lncRNA upstream 120279 10161125 ~ 10161841 (+) True G164425
TU222855 lncRNA upstream 126343 10155340 ~ 10155777 (+) True G164427
TU222943 lncRNA downstream 189412 10474670 ~ 10475022 (+) True G164493
TU222977 lncRNA downstream 256960 10542218 ~ 10546187 (+) True G164521
TU222979 lncRNA downstream 256960 10542218 ~ 10547596 (+) False G164521
TU222997 lncRNA downstream 348211 10633469 ~ 10633682 (+) True G164537
TU222998 lncRNA downstream 348550 10633808 ~ 10634030 (+) True G164538
XM_039776967.1 mRNA upstream 1249 10274665 ~ 10280871 (+) True LOC120543747
XM_039776964.1 mRNA upstream 8133 10255903 ~ 10273987 (+) False LOC120543746
XM_039776965.1 mRNA upstream 8133 10255911 ~ 10273987 (+) True LOC120543746
XM_039776966.1 mRNA upstream 9258 10255903 ~ 10272862 (+) False LOC120543746
XM_039777041.1 mRNA upstream 27788 10220219 ~ 10254332 (+) True tlcd3a
XM_039776969.1 mRNA downstream 1037 10286295 ~ 10299147 (+) True LOC120543748
XM_039776968.1 mRNA downstream 1039 10286297 ~ 10299147 (+) False LOC120543748
XM_039776794.1 mRNA downstream 27120 10312378 ~ 10316886 (+) True LOC120543654
XM_039778214.1 mRNA downstream 287107 10572365 ~ 10589296 (+) True LOC120544459
XM_039778475.1 mRNA downstream 307948 10593206 ~ 10645795 (+) True capn5b
TU222904 other upstream 73462 10208171 ~ 10208658 (+) False G164466
TU222910 other upstream 73462 10208171 ~ 10208658 (+) False G164466
TU222911 other upstream 73462 10208171 ~ 10208658 (+) False G164466
TU222912 other upstream 73462 10208171 ~ 10208658 (+) True G164466
unassigned_transcript_943 other upstream 1531007 8751028 ~ 8751113 (+) True trnay-gua_52
TU222990 other downstream 275385 10560643 ~ 10562266 (+) True G164531
TU222994 other downstream 287145 10572403 ~ 10580284 (+) False LOC120544459
XR_005636532.1 other downstream 728365 11013623 ~ 11024178 (+) False rcc1l
XR_005642016.1 other downstream 2044699 12329957 ~ 12347052 (+) False LOC120575591
TU223687 other downstream 2509302 12794560 ~ 12797300 (+) True G165033

Expression Profile