RNA id: TCONS_00006885


Basic Information

Item Value
RNA id TCONS_00006885
length 561
lncRNA type retained_intron
GC content 0.34
exon number 2
gene id XLOC_003513
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28517562 ~ 28520764 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcattagtgttattattacaaagtgaactgctttcgtttcactgttgttgttgtttttgcttttagacatgtaacttaacgtactccagagacgcactcacttgcacagcattgaatggaaaaggctttgtccatgtccagttgagggCATCAAGAACACGCAGATAGCATAAacctgtgtcagcctggacagactgTAGATCTGCTACTCAACGCCAAGGCTTTTGTATGCATGTCTGACTACTACAGTGTTCTTtaaaggtattactggagcaaaacaacagcacctgttacagtgaaatttgtattcataaaaatagtgatacatgtgtagcaggtccagtacatgtgatgtcattgagaagttgtttttattaaatgtcattaaaacaaataaataaacatgctatttaaataaatctaaatattaaaaacttgaggattaagatgagaaattaaatgcatcatctgtcttgtgaaaagggtctacttaagaattctggtgtttcccaactgaaagggatagttcactcaagaatgaaaatttattttatttttta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000162311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006878 lncRNA upstream 70907 28442373 ~ 28447433 (+) False XLOC_003511
TCONS_00008625 lncRNA upstream 71269 28446313 ~ 28447071 (+) True XLOC_003511
TCONS_00006877 lncRNA upstream 71478 28442373 ~ 28446862 (+) False XLOC_003511
TCONS_00008624 lncRNA upstream 94026 28418774 ~ 28424314 (+) True XLOC_003510
TCONS_00006868 lncRNA upstream 774058 27738489 ~ 27744282 (+) True XLOC_003507
TCONS_00008626 lncRNA downstream 14041 28533224 ~ 28537315 (+) False XLOC_003514
TCONS_00008627 lncRNA downstream 14041 28533224 ~ 28588634 (+) False XLOC_003514
TCONS_00008628 lncRNA downstream 14041 28533224 ~ 28594476 (+) False XLOC_003514
TCONS_00008629 lncRNA downstream 27851 28547034 ~ 28616959 (+) True XLOC_003514
TCONS_00008630 lncRNA downstream 118279 28637462 ~ 28643700 (+) True XLOC_003517
TCONS_00006879 mRNA upstream 3362 28476298 ~ 28514978 (+) True XLOC_003512
TCONS_00006876 mRNA upstream 94154 28218141 ~ 28424186 (+) False XLOC_003510
TCONS_00006875 mRNA upstream 97246 28166165 ~ 28421094 (+) False XLOC_003510
TCONS_00006874 mRNA upstream 99355 28166165 ~ 28418985 (+) False XLOC_003510
TCONS_00006873 mRNA upstream 395886 28109403 ~ 28122454 (+) True XLOC_003509
TCONS_00006888 mRNA downstream 98381 28617564 ~ 28619811 (+) True XLOC_003515
TCONS_00006889 mRNA downstream 101500 28620683 ~ 28631342 (+) True XLOC_003516
TCONS_00006891 mRNA downstream 1018573 29537756 ~ 29540033 (+) True XLOC_003522
TCONS_00006894 mRNA downstream 1152478 29671661 ~ 29677714 (+) False XLOC_003525
TCONS_00006895 mRNA downstream 1152486 29671669 ~ 29677693 (+) True XLOC_003525
TCONS_00006865 other upstream 997767 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 1903753 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 2440279 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 3035370 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 3039922 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 832918 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 1047564 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 2452851 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 2455588 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 2496336 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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