RNA id: TCONS_00008630


Basic Information

Item Value
RNA id TCONS_00008630
length 876
lncRNA type read_through
GC content 0.42
exon number 2
gene id XLOC_003517
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28637462 ~ 28643700 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTTGCTTCCTTGGGTTGCTTGTGCACCCCGTTGAATCCTTTCTTGCCTTCTGTTTCGTGCCCTGGAGTTGTAGAATCTGAAAACCAAGGAAACAAACAGCATGGTGGCCACAGACAAGGTGATATGAAACAAATGCAACAACCCTGTTTACACTTGGCTTCACTTGAGCTTCCTTTCGGGGATGGAGGGGTGGTAATGGTGGCTAACATGATCCTAGCAGTAACTGTTAGATTAGAGAGAAGGACTGTACACGATGCAGGTCACTGAATATGCGACGAAAACAACTTAAGGACAGGTCGGTGACAAACAGATGAGGAGGGGAAATCATCGTCGAACGTCACATGCACCAACAACCCCGGAGAAAAGCTGCGGTCTTTCCTCTGCGGTTGAAAAAAACAGTCACACGGATGGTCATCATAGATACTGAACACATGAAATCAGATAGTAGAAAGGCCACTGATTTCACCGTTTCTCTAAAAGCCTGGGTTGGATTTGGGTTGGGGATGACCAGACACGCAATAAAGCCATTATCTGCTATACCCTCCCGCCTCCTTTGCATCTTTCCCCCCAAActtctattaattattattgttatttttttgttttctgctcTGTAATATACTTCTCATTATTTACAGGGATGTACACAAAATACACTTAAAAAGAGGATCTTCCATTTCTTTGCGATAAAATGTCACAGGACGTTTAgtattgtctcttttttttttgttacattccAGCCGAGAGCCATTCAAGAAAACAAAAACGGAAAAAAATACTGTGATCAAAAAACACAAATGGCGTAAAACATGTTCTTTAAAAAAGGGGCGCATTTGAGTCCTGTTGTGCCAGTGTGCGGTATAAGGGAATTCCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008629 lncRNA upstream 20503 28547034 ~ 28616959 (+) True XLOC_003514
TCONS_00008628 lncRNA upstream 42986 28533224 ~ 28594476 (+) False XLOC_003514
TCONS_00008627 lncRNA upstream 48828 28533224 ~ 28588634 (+) False XLOC_003514
TCONS_00008626 lncRNA upstream 100147 28533224 ~ 28537315 (+) False XLOC_003514
TCONS_00006886 lncRNA upstream 117076 28518405 ~ 28520386 (+) False XLOC_003513
TCONS_00008405 lncRNA downstream 19204 28662904 ~ 28663396 (+) True XLOC_003518
TCONS_00008631 lncRNA downstream 153567 28797267 ~ 28836699 (+) True XLOC_003519
TCONS_00008406 lncRNA downstream 564186 29207886 ~ 29208193 (+) True XLOC_003520
TCONS_00006892 lncRNA downstream 923046 29566746 ~ 29567634 (+) False XLOC_003523
TCONS_00008407 lncRNA downstream 947173 29590873 ~ 29591196 (+) True XLOC_003524
TCONS_00006889 mRNA upstream 6120 28620683 ~ 28631342 (+) True XLOC_003516
TCONS_00006888 mRNA upstream 17651 28617564 ~ 28619811 (+) True XLOC_003515
TCONS_00006879 mRNA upstream 122484 28476298 ~ 28514978 (+) True XLOC_003512
TCONS_00006876 mRNA upstream 213276 28218141 ~ 28424186 (+) False XLOC_003510
TCONS_00006875 mRNA upstream 216368 28166165 ~ 28421094 (+) False XLOC_003510
TCONS_00006891 mRNA downstream 894056 29537756 ~ 29540033 (+) True XLOC_003522
TCONS_00006894 mRNA downstream 1027961 29671661 ~ 29677714 (+) False XLOC_003525
TCONS_00006895 mRNA downstream 1027969 29671669 ~ 29677693 (+) True XLOC_003525
TCONS_00006896 mRNA downstream 1095648 29739348 ~ 29755142 (+) True XLOC_003526
TCONS_00006897 mRNA downstream 1127266 29770966 ~ 29786528 (+) False XLOC_003527
TCONS_00006865 other upstream 1116889 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 2022875 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 2559401 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006817 other upstream 3154492 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 3159044 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006890 other downstream 708401 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 923047 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006949 other downstream 2328334 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 2331071 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 2371819 31015519 ~ 31024572 (+) True XLOC_003549

Expression Profile

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