RNA id: XM_039776794.1


Basic Information

Item Value
RNA id XM_039776794.1
length 2179
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120543654
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10312378 ~ 10316886 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaaagcaacagAACTACAGTGGCACACAGAGTTCCTTTCAAAACAATCCTTTGGAGAGTTTCACAAACGCCAGTATACAACGAAAAATCATTGAGAAAATGTTTAGATCCATTTTTGGACAAAACTTCTTTACAAGACCTCGGTCTTCAGGAGATATGGACTCTTCTTCGAAGAAGTCCAAACGAAGGCGTGAGAGACCTTCGTCTCCTGAAGACCTCAACCCTCCCACCATCTTGAGGGAGCACGGACGAAGGGGTGAGAGACCTTCGTCTAGTGGAGGCACCAACCCTTCTACCATCATGAAGGGGCACAGGGAAAGGGGTGAGGGCCCTTTGTCTTGTGCAGAAAACCAGCCCTCTACTACCAGGCAGCACGTACAAAGGGGTGAGAGCCCTTCGTTGTCATCTTCTGAAGATGACCAGCGTTGTACAACCAGGCTGCTAGTACGAAGGGATGTGAGCTCCTTGTTCATCGTGGGCACCAACCCTTCTACCATTATGAAGGAGAGCAGGCAAAGGGGCGAgagctctttgtcttcctcttctgAAGATGATGAGCCTTCTCCCACCAGGCAGCGAGTACGAAGGTTTGAGAGCccttcttcttcatcctctgaAGACAAGCAGCCTTCTACTCCAAGGCGGAAGCAAGCATGGAGGGGTGAGAGCCCTTCATCGTCATCTTCTGAAGATGACCAGCGTTGTACCACCAGGCTGCGAGTACGAAGGTTTGAGAGCCCTTCCTTTTCATCCTCTGAAGACAAGCAGCCTACTACTCGGAGGCGGCAGCAAGCATGGAGGGGTGAGAGCCCTTCGTCGTCATCTTCTGAGGATGACCAGCGTTCTACCTTAAGGCTGCAAGTACGAAGGGATGTGAGCTCTCTGTTCATCGTGGGCACCAACCCTTCTGCCATCATGAAGGAGAGCAGGCAAAGGGGAGAgagctctttgtcttcctcttctgAAGAGGATGAGCCTTCTATCACCAGGCAGCGAGTACGAAGGTTTGAGAgcccttcctcttcatcctccgaAGACAAGCACCCTACTACTCCAAGGCGGCAGCAAGCATGGAGAGGTGAGAGCCCTTCGTCGTCATCTTCTGAAGATGACCAGCGTTCTACCACCAGGCAGCAAGAACGAAAGGATGTGAGCTCTTTGTTCTTCGTAGGCACAAACATGAAGGAGCGCAGGCGAAAGGGTGAGAGCCCTTTGTCTTGTGCAGAAAACACGCCCTCTACCACCAGTGCAAGAAAGGAGAGGGAGATCATTGAAAGAGAAAAGCAGTGTTTGGAGGAGGagggtttaaaaagagaaagagagaggtgtgaaaagatgaagagaaagaaccaggagaaggagaggaaaatgTTTAGTCCGCGTTCAAGAATGTACATTTGGTGGCTCAATTGCAAGATAGACAACATTGCCAGGGACATCCAATCGACCTTTGTGGATGAGCGCTACCTCCTGCGTCATGATCCCCTCAGAAATCCAgagaaaatggcagaaaaagaACGGCTGCTTGACCGAAGGAGGGAGCTGGTCGTGTACAAACGCAGACAAGAATTTAAGGTGGAGAGGGAAGTGAGGAAGCAAAGACTGAAGGTAGAGAGGAAGGAAATAAATGCGAAGAAGATGGAGAATATCTCTGAGTTATGGACCAACTCAGAATACCCAGCTCTGTTAAATTTTCTCTACGGACCAATGCCAATCAggtcacatatatatataaattaagaTAAAAGTAGAGCAATCAGAAAAATGGCACCAAATAGAGAGAGGTAATTGAGGGAGACGGCAAACATTTCAGATTTGACAAAATAGaagtaaagaaaagtaaaatattcttttaaaacattagcaaccaCCATCAAATATCCTTGTAACCACATGATAACACCCTAGATGTTGGCTTTAATTTAGTTATACAGTCAAAGAGCATTGTGCAAATAACAGTGTCCTAACTTAATGCCACTTGACCCAATCTAATTCATCCTAACCTAGGCTAATTTAACCAAGGTTAGCCCAACACCTATCCTAATTTAGCTTTGGTTAGGCTCTGgcagagggttagggttagacccTAAAGACAGTATAAAGAAgaaagtaaggcaagaataggttgaaaatagtaataaaaacttataaaaaaaacagtagaaagaaggaaggtaAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222924 lncRNA upstream 27120 10282120 ~ 10285258 (+) True G164475
TU222908 lncRNA upstream 103720 10208171 ~ 10208658 (+) False G164466
TU222909 lncRNA upstream 103720 10208171 ~ 10208658 (+) False G164466
TU222894 lncRNA upstream 112479 10199005 ~ 10199899 (+) True G164462
TU222853 lncRNA upstream 150537 10161125 ~ 10161841 (+) True G164425
TU222943 lncRNA downstream 157784 10474670 ~ 10475022 (+) True G164493
TU222977 lncRNA downstream 225332 10542218 ~ 10546187 (+) True G164521
TU222979 lncRNA downstream 225332 10542218 ~ 10547596 (+) False G164521
TU222997 lncRNA downstream 316583 10633469 ~ 10633682 (+) True G164537
TU222998 lncRNA downstream 316922 10633808 ~ 10634030 (+) True G164538
XM_039776969.1 mRNA upstream 13231 10286295 ~ 10299147 (+) True LOC120543748
XM_039776968.1 mRNA upstream 13231 10286297 ~ 10299147 (+) False LOC120543748
XM_039776967.1 mRNA upstream 31507 10274665 ~ 10280871 (+) True LOC120543747
XM_039776964.1 mRNA upstream 38391 10255903 ~ 10273987 (+) False LOC120543746
XM_039776965.1 mRNA upstream 38391 10255911 ~ 10273987 (+) True LOC120543746
XM_039778214.1 mRNA downstream 255479 10572365 ~ 10589296 (+) True LOC120544459
XM_039778475.1 mRNA downstream 276320 10593206 ~ 10645795 (+) True capn5b
XM_039776940.1 mRNA downstream 333111 10649997 ~ 10696750 (+) True LOC120543733
XM_039776939.1 mRNA downstream 333111 10649997 ~ 10696750 (+) False LOC120543733
XM_039776941.1 mRNA downstream 333111 10649997 ~ 10696750 (+) False LOC120543733
TU222904 other upstream 103720 10208171 ~ 10208658 (+) False G164466
TU222910 other upstream 103720 10208171 ~ 10208658 (+) False G164466
TU222911 other upstream 103720 10208171 ~ 10208658 (+) False G164466
TU222912 other upstream 103720 10208171 ~ 10208658 (+) True G164466
unassigned_transcript_943 other upstream 1561265 8751028 ~ 8751113 (+) True trnay-gua_52
TU222990 other downstream 243757 10560643 ~ 10562266 (+) True G164531
TU222994 other downstream 255517 10572403 ~ 10580284 (+) False LOC120544459
XR_005636532.1 other downstream 696737 11013623 ~ 11024178 (+) False rcc1l
XR_005642016.1 other downstream 2013071 12329957 ~ 12347052 (+) False LOC120575591
TU223687 other downstream 2477674 12794560 ~ 12797300 (+) True G165033

Expression Profile