RNA id: XM_039776924.1


Basic Information

Item Value
RNA id XM_039776924.1
length 5351
RNA type mRNA
GC content 0.43
exon number 9
gene id rab24
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8259787 ~ 8278089 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCGCCTCCTGGAAACCGCCGTGTGTCGCCTCTTTGGTTCCCACCCAAACAAACAAAGCTCATGGAGATTTCTCCCCCctcagaaacagctctgtgtcCCGGACAGCTGACCCCGTCAGTTAGCTGGACTTGTTATCAGAAAATCAAGCTCCTGTTAGCCGGTTACGATATCTTTCTGTAACGGTATTTAACTGACGGTTTGTAATTCCAGCCGTTGCGCAACACTAACGTTAACCTAGCTAGCTGCGAGCCtccaaacagcagcagcaggagagatGACAAGCCGTTTGTCGGTTACAGGCTGTACTTTAAAACGGGTTTGACAAGCACGGATGACAGCCCCGGTTCGGCTCCTGCTTGGAGAAGATCAGATGTTGAAGAAAATTTGTTGAGTCAAGCTAGTTACCAGTAACTATGAGTGCAATGCGTGTGGACGCCAAAGTGGTGATGCTGGGGAAGGAGAGCGTGGGCAAGACCAGCCTGGTGGAGAGATACGTTCATCATCGCTTCTTGGTCGGACCGTACCAGAACACTATCGGTGCTGCTTTTGTTGCCAAACCAATCCAGGTGGGAGAGAAAGTGATCACCCTGGGAATATGGGACACAGCTGGATCCGAGCGCTACGAAGCCATGAGCCGAATCTACTACAGAGGAGCCCGGGCAGCCATAGTCTGCTATGACCTGACCGACAGCAGCAGCTTCCAGCGAGCTCGGTTCTGGGTGAAGGAGCTGCAGAACTGCGAGGAACACTGTAAGATCTACCTGTGTGGCACTAAGAGCGACCTGATTGGAGGAGACCGGAGCCTGCGGCAAATCGACTACCACGATACTCAGGACTTTGCTGACGAGATCGGTGCGCTGCATTTTGAGACCTCcagtaaaacaggaaacaacgTGGACGAGTTGTTCCAGAGAGTTGCTGAGGATTACAACAGCACTGCCCTCCAGTATATGACCGCGGAGGAAACAGGCGTGGACTTGGGCCAGAAGAAAGACTCATATTTCTACTCCTGTTGTCATAACAACTGATGCCGAGCAACAGGAAGGGGATCACCTTCCCTCGGCCGGAGCAAAAACCTGGATATGCCTGGACGGACGGCCGGATAACTCGGCTCTGGAGCTGGGATCCAACTCCCGAGAGGAAGAAGACCTCAGTACTGCTTACTGTTTATACCTTACTGTACACGTTCATTACTTTAGTGCCATAAAGAACTGCCGGCTGCAAGACCACGGAAGAGGATCTACTGCTGCAACTGTTCCTGGGTGGGAGAGGGACCTAAAACCCTAAACTCTCACCCAGTTAACTCCCTTttcttcttcagcttcttctgaGCTGGCCCCTGGAAGTAAACCTATCTCTGAAGCTGCGGAGTTCATCAATCTGAAGTTAAAAAGAGGGATCCCGCCGAACACGGACTGGCAGAGACAACCTGGTTGTTGTAGCGAGGGCAGTGCCTCAGGAGGGTGAATGCTTTGTTTACAGCGCTGGGTTTTTGTTTACGTATTTAACCTTGCTGTGGAAACCCGTCTGTTACACCTGCACGAATGACGCCAACGGAGTGAAGCCAACTAcgatatataaaaaacaaaacactccgGTGTTTCCAGTCATACTTAATTCAAAtaaattcccttttttttttgcaaatctaGTATAATGGAGTGATACCAATTATCTTTATAAAGGCCTTAATACTCGCagtaggaatgtgtgtgtgtgtgtccaaaattCAACTTCCCAGAGCGTTGGCTCTTCAGCGTTTACCACCACATTATGGATGTAATACAGCTACTGGATACAGCGCCACCACGCAGCCAGTGGCCACTCACGGTACTGCAacttagagctgcaaagattattcgattagttgtcaactaataaatgaatcgccaactattttgataattgattaatcggtttgagtaatttttattgaaaagaaattctgattccagctcctcaaatgtgaatatgttctagtttcttctctcctgaCAGTTGAAGGTGCTGTAGGAAGGATTGTGAAggtccaggacttagccaaaaaatgtgaacatcgacaacttctcagtctctcccccctttccgctaaagcccaaaacagtctcctaagcccctccccccacaagagagaattaatgtgtgtgcatgagcagtgattgacacgcaggtagacaccccccctggccctgattggtgcatctgaacagggagcggtggatttttgcaaatcgcactacaggctggagGTGGTGTCAGAGGAGCtgggtttatttttaaatgacccgcttcatgtagttctactggaacataggctgacagaaagttagttttataaggctcacctactgcatctttaaattaatatctttgagttgtggacaaaacgagacatttgaggacgtcctgTTGGGCTTTGGAAAGCAGCGATTGACATTTGTCAACAGTTTCGGagattttataaaccaaacaactaatcgaataatcaacagattaatagacaatgaaaataatcgttagttgcaataaaaacacaaattctTTTCCACATAGACGACCATCCTAAAAGAGACCcctttaaaacctcttaaaGGGGCCAGCAGGTAGAAGCTGGGAAACGTTTTCCCAGCGAGCAAAAATGAATGGCGGACATCTTTTGGAGTTTGGTATCGAGTATGCTGTAATGTATCCATAGTGACAGAGAGCACAACATGTATCTGATACGTTATCTTTTTCAGCATAAGCTACCGTTCTGATTTTAAGGTTCCTAAAACGCCCTGTAATTAAATTGCATGGGCTGAGGTGACTGGAAGAACATTTTAACAACCGTTAACTTTTCTACATTTAAATGCACAGTACACACGTGGAAATGTGACTGTCAGATTTTCTTTCGGTGTCTTGTGGCAGTGAAATGTTCCTTTTTAAGAAACTCTTCTACAGAAAGATGATCAaagtccccccccctcccactgtGGTGACAAACTGCTTCCCAACACAGAAAAAGACAACGTTGTGGGTGAACACGGCTCAGACTGTCATTTCAGTGTCCTCAGAACAATATCTACAGCTGTATTTAACATGAGACTCTAATTTATTGCCTTTTAAGTTGTGCTGCCAGGAAGATGTgcggaaataaaaaaaaaagaaaagaaaaagacactaTCCGTTTCCTCCGTGTTGCTGCTTTGACGTGTTGATGTTTCACGTGTTGATGTTTCGATGCACCGTATTTAACGAGGGCTGTCCAGTGTCAACtacaaatgtgttttctgttAATTATAGTGCGTTTCATTTGTACTCGGCAGTcggattttccgaggtcaaagtgGGAAACGCGCCCCCCCTGACCTCGGGCAACCACCGAGTACCCCGAGCTAAAactccaacatggctgccccgtGCATCGAGAGTTGTGAAAGCTGCGGTAACATACCGTTATTaacacttctgtcttatttgtgtctcactaaatcaatcgttcacacagtcctgtccaacttctatctgtgctttttgtgaaaacaaacagcgtaatgcgttgttatccACTGGCACTGCTAACAGTGGCTAAcagtggctagagctaatgGAAACGATGAAAACCTGACTTGTAAGTGGAACGCATTtaactcgggtgtgacgtcatcgcggtaaatggaacgcactataaaAGCTTAATGTCTGAAGGCTCTGATAGATTTTATAGTGATTGATCTACAATTTCTTTGCCTTTGTGTGTAATCTGAGCTTTTTATGCATTCAAGTGAAAAATAATGGCGATATACTGTTTGTAAAACTGTAAAACGTATTGAAAATCATCACAGACCATAACATTAATGCATCATCGCCTACAGATCTGAATCTGTGGCGAACAGAAATACATGTCTTTCTACCAGAGTTTGGGGTTTCCAGACGGTTTTTTTCTTATTCCACTTGCAGATAGTTTTATCTCTCCCCACCctgaaagaaggaaaaaaaagcttGTGCCTCAAAAAGGGACGTTATAATAAGCCAAATAAAGCGAAACTGTCCCCGGGAACAGAACAAACCCACGAATGGTTTAGCCTATCACCTGTACTTTATATTGCGAAAGAACATCTGTTTTTCAGCTTCCTTCAAGGTTGTGGGCATTTTCTAAACTGTCCTCGGTGGTGCGTTGAGGGACGCTTTGATGTTAGAATTATCATTAGCCAATAAAACAGTCTTATTACAGAGTATCTGCAGGTCTTAACATATTAAAAAGCATTCATTTAAGGCCTCTAAAAAAGGCCTTAGGTTTTTAAAAAGTCTGACATTTAATTCACAAAAAACTAATTGAATCATTATGTTTTGCTGCTGCTCATCACTTTTGAATTGATTCATTATAATATTAGAAATGATGGTTATATACAGCTGGGAACTATAGAAAAAAGGTGTGATCTAAATGTTAATAAATTTTCTTAATGATTGTAAGCCTTATTATCCCTACTGGTATTACGTCATTCTTTGACCAGTATGACTGCGAAATAGGTATTAGACTGCAGTCTGTGGTCTAAAAATAAGCTAAGTGAAGTGAACACTGCAGAAACAGTGTATCAAGAATAATGAAACTAGAAATCCATAAACCTAAAATATGCTTTGgaaaatgtagaatacataTGTGACATAAGTGGGAAAAGAAGTGTGTGGAAACTcacctttgttttgttttcagcagTGTTGGTCTCACCTTCTCCATCTTCACGATgctgcgaaaaaaaaaaaaaaaagtacatcacGTGATTTACCGTACGTCAACTTTAAAACAAGGAGATAAAATGAGAAGTAAAACTTACTTGGTTCTGGTGCGGTGTGAAGAACTTTCTGGACTCTAAACCGATGACTACACAAGCTGATTTACACCGGAGAGCTCATTCACAATGTTCCTGTTATAAAGGCAGATCTATTTATTGAATACCATTATTTTGGAGTGCTATGTATGTATTGTGAATGTATTGCTACATGTTTGCACTCATTTTCACAGTCTGGCTTGTGACTATGACCATTTTCTTTGCAAAGCTTAATTTAAATCTTTAATACAGGGACACCTGAGGGTTTCGGAGTGCCAACGCTGCCTTTTCTTTTCCACTGTTGATTCACCAACACTAAATCTCTggcttatttttcttttacttttgttgttttaCTCACCTGTGGCtaacccacacaggtgtttctaCGTATTGTGGCTGGTTAGACCTCTTCTCTGGCCTCTGAACAAACGGGACCTTCTTCTTTCTCATGGCTGAATCCAAACGGTATTGCACGCCGTCTCCGGCAACAACTTAAAGCTGTGCAAAgtgaataataaagtttaccACAGCATCTCCA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222211 lncRNA downstream 106440 8153081 ~ 8153347 (-) True G163958
TU222208 lncRNA downstream 194588 8064776 ~ 8065199 (-) True G163956
XR_005636378.1 lncRNA downstream 275591 7983068 ~ 7984196 (-) True LOC120543653
TU222170 lncRNA downstream 393676 7861453 ~ 7866111 (-) True LOC120543652
TU222113 lncRNA downstream 457587 7799900 ~ 7802200 (-) True G163896
TU222274 lncRNA upstream 4290 8282378 ~ 8287662 (-) True G164006
TU222290 lncRNA upstream 57508 8335596 ~ 8341644 (-) True G164017
TU222294 lncRNA upstream 65311 8343399 ~ 8343646 (-) True G164021
TU222301 lncRNA upstream 88315 8366403 ~ 8368088 (-) True G164027
TU222302 lncRNA upstream 88315 8366403 ~ 8368088 (-) False G164027
XM_039777898.1 mRNA downstream 163714 8074947 ~ 8096073 (-) True fgfr4
XM_039776791.1 mRNA downstream 278883 7954017 ~ 7980904 (-) True uimc1
XM_039776792.1 mRNA downstream 310843 7907420 ~ 7948944 (-) True LOC120543650
XM_039776793.1 mRNA downstream 372699 7862847 ~ 7887088 (-) False LOC120543652
XM_039777606.1 mRNA downstream 412984 7802217 ~ 7846803 (-) True zgc:77151
XM_039776700.1 mRNA upstream 37690 8315778 ~ 8333070 (-) True si:dkey-183i3.6
XM_039777953.1 mRNA upstream 90407 8368495 ~ 8380575 (-) True rabgef1
XM_039778675.1 mRNA upstream 150328 8428416 ~ 8441204 (-) True vps26c
XM_039826494.1 mRNA upstream 167030 8445118 ~ 8449262 (-) True kcnj15
XM_039826354.1 mRNA upstream 173489 8451577 ~ 8465799 (-) True smg8
unassigned_transcript_941 other downstream 277716 7982000 ~ 7982071 (-) True trnad-guc_16
TU221956 other downstream 973522 7257138 ~ 7286265 (-) True G163767
unassigned_transcript_940 other downstream 3456146 4803570 ~ 4803641 (-) True trnad-guc_15
unassigned_transcript_939 other downstream 3456825 4802891 ~ 4802962 (-) True trnad-guc_14
unassigned_transcript_938 other downstream 3458866 4800851 ~ 4800921 (-) True trnag-gcc_11
unassigned_transcript_942 other upstream 14319 8292407 ~ 8292518 (-) True trnal-caa_12
TU222295 other upstream 68740 8346828 ~ 8352505 (-) True G164022
TU222314 other upstream 97804 8375892 ~ 8380546 (-) False rabgef1
XR_005636462.1 other upstream 234086 8512174 ~ 8543503 (-) False trim37
TU222503 other upstream 359626 8637714 ~ 8639161 (-) True G164179

Expression Profile