RNA id: XM_039776996.1


Basic Information

Item Value
RNA id XM_039776996.1
length 2655
RNA type mRNA
GC content 0.59
exon number 13
gene id ncbp3
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 3070070 ~ 3086217 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGACAGAGAACCATTGCCGGGTTACGAAAACAACCGCAGCAGCGCACACACAGCAGCCGTtgatcgcagctagctagcgccATGGCGGCAGTGCGTAGCTTACGGGTGTCGGTGAAATCAGACAGCGGCTCGGACCGCTCGGAATCGGACTCCGACTCCGAGTCGGACAGAGATGTCCGCGAAGCCGAACCgatggaggtggaggtggaagtGGAGGAGGGAGAGCTGGAGACGGAGGACATTTCCGTTAACCGTTCCCTGAAGGAGCTGCTACCGGATACGAGCCGGCGATATGAGAACAAGGCTGGAGCCTTCATCACGGGGATTGATGTCAACtcaaagGAGGCCattgagagaaaagagaagcgAGCAAGACGTTTCCATATCTGTCCCGAGGAGAACGTCGAACACAGGAACGTTTTCCTGGATAAAGAGACCATGAAGAAAGCTATCTCCAGCCTGCGTATGGAGGCCATCTACGTGACGGGCGTGGACGACATGAGCACCCAGGACATCTTCGGCTACTTTAAGGAATATCCTCCAGCCCACATCGAGTGGATCGATGACACCTCCTGTAACGTGGTTTGGCTCGACGACAACACGTCCATCCGAGCGCTCATCAACAGCAGCCGGATGCCCGACCCGGAGACGGTTACCACGGAGACGGTGAGCACTGACCAGGCGGGCGAACAGAGCAAAGtggCAGGTCGCCTGGGGCGCTGCTCGGAGGacgaagatgatgatgatgatgacgaggaggaggaagagggcgAGGTGGACGAAGACGAAGCCGTGAAGAAGAGCGGCGAGGAGATCGAGGCCAAGGACAGCGACGGAGAGGCGGAGCCTAAAGCCAAGGCGCAGGACGTCCAGgtggAGGACCTGTCCCAGGTGGAGCGAGAGTCTCTCCTGAGGAACGACCTGCGTCCGGCCATCAAACCCTTCAAAGGAAACAAGCTCTTACTGCGCTTCGCCACGCACGATGATAAGAAGGAGCTGGGCGCCGCTCGCCGCAGCAGGTACTACATGAAGTATGGGAACCCGAACTATGGAGGCATGAAGGGGATCCTCAGCAACTCCTGGAAGAGGAGGTTTCACAACAGGCGCATCCAGCGAGACGTCATCAAGAGCAAGAAGCCTCTGATCGGAGACAACCTGGGACACACACCTCCGTACACCCACCGGCACTCCGCGGACCTGGTGAACCTGCCCGAGGAGCCAAtcaaagaagaggaggaggaggaggatgatgaagaggagggagacGAGGACATGGAGGAGGACGACCGCGTGGTGGAGTACAAGGAGCGAGCGGAGAAGGAGCGCGGCGGAGGCGTGCGCACGCTGGGGACGGGTCTCCGCGGCCGCGCCGAGCGCTCCCCGTCCCATTGGTCGGAGTCGGACGAGATGGACTACGACCTGGAGCTGAAGATGATCTCCACGCCCTCGCCCAAGAAGACGAAGAAGATGACCATGTACGCCGACGAGCTGGACACGCAGCTGAAGAGCATCCGGAACCGGGTGGGGGGGTCGGGGTCACAGAGCCGAGCCAAGTCCACGTCGCCCTGCAAGGTGACTGACGTCCGgcagctgctggaggagaagaagagacacTCTCAGCACAGACAGCCCCCCCCGGTGGCAGCCAGCGGGAAGACAGATGTACGGCAGCGTTTGGGGAAAAGGCGCTACTCTCCCGACAGACGGCGCTCGCCCTCCCCCGTCTCCCCCAGAGACCTGCCTCCAGCCAGAGAACCAATCAGAGACGTGCATCGCAGACTGGGCGTGGCCACGCAAGAACACAGAGCCGACTACTCCAGCTCATCCAAAGACAGAAAGAgCGGTCTGTGGAGCAGACTGGGCTCCGTGGAAGACGACAGCAGCGCCGGACGCAGCGAGCGCAGGCCCAGCAGCCGGCCAGCGGGCctcttcacctcctcctcctcctcttcctcctcctcttcctctgcggGGAGGAAGGACGCCAGCAAGGGCGCCGGcagaaaggaagaagaagaggaggtggaggaggaagacgaCTCGACGCTGCAGAAGATGTGGGGCGCCATGATCAAACAGAAACAGGAGCGTATCTCCACCAGGATCAAGAAGAGCCGGCTGGACAACCTGCCCTCACTGCAGATCGAGATCAGCCGCGACAGCAGCGAGGACTCGGACGCCTGAAGGGCCAGAGGGGACCGGGGGGGGGGCGAGGGACCAGGGTGGGCAGGGGGCCAGGGGGGACCAGGTTCTTCTCTTTCTGAACTTTACATCACACCTTTTCTCCATGAACAGAAATATAAAGAACAGACTGCAGATCTGAGGCCAGTGGGCTGGTCCTCTTTAGCtttattttgtgtctccagGACAGATTTACTGAATGGGGTCCCGATCCAGGGGCTCTGAGGGTCCAGGGGCTTCTAGGATCCAGGGGCTCTGAGGGTCAAGGGACCCCTGTTGGAAGTGGCTGTTAACATGTCTTGTCAGTGTAAAGTAGAGATCTCCTGatggtgttttgttgttttaatatCCACATCCACCCGACAATGTGTAAAGAAACCCAAACCccaataatagtaataataatgttcTAATGCAgacatgtgtttttgtttctcgTCTCCAGTGTCAATAAATCAGCCTGTTGTCATGAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636397.1 lncRNA downstream 34318 3029974 ~ 3035752 (-) False LOC120543774
XR_005636395.1 lncRNA downstream 34318 3029974 ~ 3035752 (-) True LOC120543774
TU220636 lncRNA downstream 136972 2866911 ~ 2933098 (-) True G162909
TU220658 lncRNA downstream 155501 2914009 ~ 2914569 (-) True G162922
TU220631 lncRNA downstream 204844 2864648 ~ 2865226 (-) True G162906
TU220688 lncRNA upstream 1704 3087921 ~ 3089608 (-) True G162939
TU220690 lncRNA upstream 1704 3087921 ~ 3089608 (-) False G162939
TU220692 lncRNA upstream 1704 3087921 ~ 3089697 (-) False G162939
TU220693 lncRNA upstream 4055 3090272 ~ 3090937 (-) True G162940
TU220695 lncRNA upstream 4055 3090272 ~ 3090937 (-) False G162940
XM_039777007.1 mRNA downstream 25539 3037923 ~ 3044531 (-) True LOC120543772
XM_039777000.1 mRNA downstream 132318 2924482 ~ 2937752 (-) False LOC120543768
XM_039777001.1 mRNA downstream 136012 2924482 ~ 2934058 (-) True LOC120543768
XM_039777006.1 mRNA downstream 171608 2887536 ~ 2898462 (-) False LOC120543771
XM_039777004.1 mRNA downstream 171610 2896265 ~ 2898460 (-) False LOC120543771
XM_039777956.1 mRNA upstream 99936 3186153 ~ 3189020 (-) True LOC120544311
XM_039777882.1 mRNA upstream 122757 3208974 ~ 3233282 (-) True LOC120544249
XM_039826535.1 mRNA upstream 261403 3347620 ~ 3354553 (-) True LOC120575705
XM_039776834.1 mRNA upstream 504094 3590311 ~ 3592122 (-) True LOC120543677
XM_039776833.1 mRNA upstream 511494 3597711 ~ 3599732 (-) True LOC120543676
TU220637 other downstream 240476 2827089 ~ 2829594 (-) True G162910
XR_005636415.1 other downstream 418667 2639282 ~ 2651403 (-) False LOC120543939
unassigned_transcript_888 other downstream 839975 2230024 ~ 2230095 (-) True trnae-cuc_26
unassigned_transcript_887 other downstream 862862 2207120 ~ 2207208 (-) True trnay-gua_44
TU220454 other downstream 1233568 1835969 ~ 1836502 (-) True G162787
TU220727 other upstream 92550 3178767 ~ 3217555 (-) False LOC120544249
TU220733 other upstream 104548 3190765 ~ 3198248 (-) False LOC120544311
TU220739 other upstream 141653 3227870 ~ 3232004 (-) False LOC120544249
unassigned_transcript_891 other upstream 318970 3405187 ~ 3405258 (-) True trnad-guc_8
unassigned_transcript_892 other upstream 319813 3406030 ~ 3406102 (-) True trnav-aac_3

Expression Profile