RNA id: XM_039777113.1


Basic Information

Item Value
RNA id XM_039777113.1
length 2792
RNA type mRNA
GC content 0.54
exon number 15
gene id dbn1
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 7626700 ~ 7782793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGACACCGTTCTCGTCTCTTTGTCTCCACCAGTCAGAGCCTCCTCCTCTCCGTAGTCTCATtccgtgtctctctctccatcagcAGCGGTCTGGATGCTTGCAGGGACAGAAACATGGCTGTGAATCTCGGCAAGAACAGACTGGCCCTGCTGACCGCCTACCAGGACGTCATTGACGAGACCTCGGACACCGACTGgGCCTTGTACACATATGAGGATGACAGCAATGATTTGACACTGGCATCATCAGGAGGAGGCGGTCTGGCAGAGATCACGCTGACCTTTGACAGCGCCAGGGTGATGTACGGCTTCTGCAGCCTGAAGGAGCCCACTGCCGCTCTGCCACGATACATCCTCATCAACTGGgtgGGGGAAGATGTGCCAGACGCCAGGAAGTGTGCCTGTGCCAGCCACGTGGCCACCATCGCAGACTTCTTACAGGTCAGACCTACCACGgggGTGGAGGTCACCGTGAACGCCAGCAGTCTGGACGACATCGACCCGTCAGCCATTGGGCAGCGGCTGACCAACGGGACGGCGGTGGTGGCTAGTCCGGTCCTGAGCCGCCTGAAAACCAGAGAGGAAGAGCACAGAGACGTGGGCACGGTGTACGAGAAGACCAATGCAGAGGTGGAGATGAAGAAAATCAATAGAGAGGAGTTTTGGGAGCAGGCCAAGCGCGAGGAGGAggtgaggaaggaggaggagaagaagaaggcagCAGAGGAGCGGCAGCGCTTCGAGGAGGAGCGTATGGAGCTGGAGAGGAAAGAGCAGGAGAGCCGGGAGCAGCGGTACCGCGAGAGGGAGAGGCAGATCGAGGAGCACAGGAAGAAGTtgcaggaagaggaagaggccaAAGAGAGGTTGCGGAGCCAGACCACCATTGCAGCAGAGCTGAGCATCGACGATCTGAACCTGGATAAGAAAGAGACTGAGGTGGAGgaGGCGAAGGCCATCATCGCTCAGCGGTCAGGAAACCCTCGGGAGTTTTTCAAGCAGAAAGAGAGAGCCATGACCATCAGCGTCGACACCTCACCCGTCTCCATCCACAGGACCGGCCGCTTGGACAGCCCGTTCTTGAAGCAGCAGCACAGTCCCAGCAGCCCCAGTCCGACTCCCCCACCCTGGGGCGCCTCGCCCCTCCGCACCCCGCCACACGCACGGACGCAGCCCGCCGCTGCCGCCGGGGACGATGTCGATGAAGCAAGCACAGAGCACAACATGGCCGCGGTGTCGCCCATTCCTAAAATAGTCACCACGTCCATCAAAGAGGACTTctgcagggaggaggaggaggactgcAGAGACGAGTGGGATTCGGTGCCGAAGCAGGAGCAGAAGCCACCGGTCCAGGAGTCGGCCTCCGCCAAGCCCGTGCAGAGCGTCGCCCCGCAGGCCCGCGACTCCTCCGACTTCTCTGTGTGGGAGTCCGGGACAGACAGCCTGGTCAACCTGTGGGACAGTAGCTCCGGCCCTCCCCCCAACCCCTCCCAGACCTCCGGGTCCTCTAATCTGGTGGACCTGATGGGCGACGCTGCCCCGCCCAGCGCCTCCGCCCCCAGCGCCAAGCCTCAGCCCCTCCTCAGCTTCGACGACATGGTGGACGGGACCTTCTGCTCGGCCACCGTCGCCGAGGACGACCCCGCCAGCCTTGTGGACGTGACAGGCCCTGATCAGATGACCCTCAGCTACCAGCATGCACTGCAGCATGCGTCCGCGGAGGGGAAGGAGCTGGATGATGTTCAGCTGCTGTTGACCAATGGCGAGACACTGCTGAAAGAAGGCACTCAGGCCAGTGAGGGCTatttcagccaatcacaggaGGAAGAATTTGGCCAACCAGAGGAGTCCTCAGCTAAACCTGCGCCTGTCTTTTATAACAAGCCACCAGagATTGACATTACGTGCTGGGACACGGACCCCGTGgtcgacgacgacgacgactaACCGGCCAATCAGAAACGACCACCGGACCAAGAGGAAGTAGGAAGTGCGCTTCATGAagaaactgattttttttttttttttttttctaaaaaacaaaacaccaacaaacaaacaaaaaaaggaataataataacaaatctTGCATCAAAAGTACTTCTGTATTATCTTTTAGAGGAAAATAAAACAGTAGCCACCGAGAAAAAGTTAAAGGCGGGGTTTGAGGTATCGTTAAAGGCGGTTTGAAGGCTCGGTTATGGGTTTTTCTGTGTGttggttattttatttatttgtttttttctttttttttttgctatgcAGATGTAATAGCTGGGAGCTGGGGGGAGGGCCTTTTGTTTGTAAATGATTTATTACACATTAACGTAGCGCACTGCTGCATATTAGACACAATGAAGCCCAGTGTGTGGCAGGCAGCCGACACACTTAGTTTGTAGTGCTTTAATAACACCCTATAAAACTAATACGGTGGATCATTACAGCTGCCATGTATATCTCTTCACTCTGTTTCTTTTCTTACCTCTTTTTCACCTCCCTCCTTTCTTCTGCCTTCCTCCCAAAATATCCAGAAATATTCACCTCGGCAAGTCAGTTAATCTTGGATTTAGCCCTCGCTttattggggggaaaaaaggtgaaacattttatttattgtggtGTATCTGaacctctgtcactaacagctGATGCGATCCTGAAGAAACCATATCCATTCTCAAGATAGAATTCCTGAAAGAGTCAAACTGTGGCTcgttttttaaccttttttcgcTCCTTTTGTATGATTTTAAGACTGAATTCAAGATTAAATGGCTTGTAAATCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636423.1 lncRNA downstream 175204 7441243 ~ 7451496 (-) True LOC120544008
TU222077 lncRNA downstream 208478 7417217 ~ 7418222 (-) True G163865
TU222076 lncRNA downstream 209188 7417210 ~ 7417512 (-) False G163865
TU222070 lncRNA downstream 254967 7371265 ~ 7371733 (-) True G163862
TU222065 lncRNA downstream 295059 7331076 ~ 7331641 (-) False wwc1
TU222110 lncRNA upstream 12527 7795319 ~ 7796512 (-) True G163894
TU222113 lncRNA upstream 17108 7799900 ~ 7802200 (-) True G163896
TU222170 lncRNA upstream 78661 7861453 ~ 7866111 (-) True LOC120543652
XR_005636378.1 lncRNA upstream 200276 7983068 ~ 7984196 (-) True LOC120543653
TU222208 lncRNA upstream 281984 8064776 ~ 8065199 (-) True G163956
XM_039777490.1 mRNA downstream 155613 7458764 ~ 7471087 (-) True nop16
XM_039777952.1 mRNA downstream 228575 7330914 ~ 7398125 (-) True wwc1
XM_039778150.1 mRNA downstream 304913 7290596 ~ 7321787 (-) True rars1
XM_039826350.1 mRNA downstream 1230373 6381059 ~ 6396327 (-) True LOC120575570
XM_039826349.1 mRNA downstream 1262908 6328847 ~ 6363792 (-) True gemin5
XM_039777606.1 mRNA upstream 19425 7802217 ~ 7846803 (-) True zgc:77151
XM_039776793.1 mRNA upstream 80055 7862847 ~ 7887088 (-) False LOC120543652
XM_039776792.1 mRNA upstream 124628 7907420 ~ 7948944 (-) True LOC120543650
XM_039776791.1 mRNA upstream 171225 7954017 ~ 7980904 (-) True uimc1
XM_039777898.1 mRNA upstream 292155 8074947 ~ 8096073 (-) True fgfr4
TU221956 other downstream 340435 7257138 ~ 7286265 (-) True G163767
unassigned_transcript_940 other downstream 2823059 4803570 ~ 4803641 (-) True trnad-guc_15
unassigned_transcript_939 other downstream 2823738 4802891 ~ 4802962 (-) True trnad-guc_14
unassigned_transcript_938 other downstream 2825779 4800851 ~ 4800921 (-) True trnag-gcc_11
unassigned_transcript_937 other downstream 2826882 4799747 ~ 4799818 (-) True trnad-guc_13
unassigned_transcript_941 other upstream 199208 7982000 ~ 7982071 (-) True trnad-guc_16
unassigned_transcript_942 other upstream 509615 8292407 ~ 8292518 (-) True trnal-caa_12
TU222295 other upstream 564036 8346828 ~ 8352505 (-) True G164022
TU222314 other upstream 593100 8375892 ~ 8380546 (-) False rabgef1
XR_005636462.1 other upstream 729382 8512174 ~ 8543503 (-) False trim37