RNA id: XM_039777142.1


Basic Information

Item Value
RNA id XM_039777142.1
length 5473
RNA type mRNA
GC content 0.48
exon number 22
gene id ap2b1
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 8721039 ~ 8745957 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGACAGGGAAGTTGTCGAGTTTCCGATGACAACGAATGTACCATCACAATCCCGATTCTCCATCTTCCTGCAACCAGGCAAGGGACCAACCTGCGTCTTGCACCCTCCGTAACATTCCCCCGCTGACATACACTTAACCAGACCTAAAGGACAACAATCATGACGGACTCCAAATAtttcacaacaaacaaaaaagGGGAGATCTTCGAACTGAAGGCAGAGCTGAACAatgagaagaaggagaagagaagagaggcagTAAAGAAGGTCATCGCTGCCATGACAGTTGGCAAGGATGTCAGTTCTTTGTTCCCAGATGTGGTGAACTGCATGCAGACCGACAACCTGGAGCTGAAGAAGTTGGTCTACCTCTACTTAATGAACTATGCCAAGAGCCAGCCTGACATGGCCATCATGGCCGTCAACAGCTTCGTCAAGGACTGTGAGGACCCCAACCCTCTGATCCGGGCTCTGGCCGTCCGTACCATGGGCTGCATCCGGGTGGACAAGATCACAGAGTACCTGTGTGAGCCGCTGAGGAAGTGCCTGAAGGATGAGGACCCATACGTCAGGAAGACGGCGGCTGTTTGTGTGGCTAAACTTCATGACATCAATGCCCAGATGGTGGAGGACCAGGGCTTCCTGGACTCCCTGAGAGATCTCATTGCTGACTCAAATCCCATGGTTGTGGCCAATGCCGTCGCTGCCCTGTCTGAGATCAGCGAGTCTCACCCCAACAGCAACCTGCTGGACCTCAACCCGCAGAACATCAACAAGCTGCTGACGGCCCTCAACGAGTGCACGGAGTGGGGACAGATCTTCATCCTGGACTGCTTGTCCAACTACAACCCCAAGGACGAGCGCGAGGCCCAAAGCATCTGTGAGCGCGTCACTCCCCGGCTGTCTCACGCCAACTCAGCAGtggtgctgtcagctgtcaagGTGCTGATGAAGTTCTTGGAGCTGTTGCCCAAGGACTCCGACTACTACAACACCTTGCTGAAGAAGCTATCCCCGCCGCTGGTCACCTTACTCTCCGGAGAGCCTGAGGTCCAGTACGTGGCTCTGAGGAACATCAACCTCATCGTCCAGAAAAGGCCTGAGATCCTGAAGCAGGAGATCAAGGTGTTCTTTGTCAAGTACAACGACCCTATCTACGTGAAACTGGAGAAACTGGACATCATGATCCGCTTGGCCTCTCAGGCAAACATTGCCCAGGTGCTGGCTGAACtgaaggaatacgccaccgagGTGGATGTTGACTTTGTGCGCAAGGCTGTACGAGCCATCGGACGCTGCGCCATCAAAGTGGAGCAATCAGCTGAGCGCTGTGTCAGCACCCTGCTGGACCTGATCCAGACCAAGGTCAACTACGTGGTTCAGGAGGCTATTGTGGTCATCAGGGACATCTTCCGCAAGTACCCCAACAAGTATGAAAGCATCATTGCCACACTGTGTGAGAATCTGGACTCTCTGGATGAGCCCGATGCCCGTGCTGCCATGATCTGGATTGTTGGCGAGTACGCCGAGAGGATCGACAACGCTGACGAGCTGCTGGAGAGCTTCCTCGAGGGCTTCCACGATGAGAGCACCCAGGTCCAGCTCACTCTTCTGACTGCCATTGTCAAGCTGTTCCTTAAGAAGCCGTCGGAGACTCAGGAGTTGGTACAGCAGGTCCTGAGCCTGGCCACTCAGGACTCTGACAACCCTGACCTGCGTGACAGGGGCTACATTTACTGGCGCCTGTTGTCCACCGACCCTGTGACTGCCAAGGAGGTGGTGTTGTCAGAAAAGCCCCTGATCTCAGAGGAGACAGACCTGATTGAGCCCACCCTACTGGACGAGCTCATCTGCCACATTGGCTCCCTGGCCTCTGTCTATCACAAGCCCCCCAGCGCCTTCGTCGAGGGCAGCCACGGAATCCACCGGAAACACCTTCCTGTGCAGCACAGCAGCATTGATACAGGTGAGAGCCCAGTGAGCAGCGGGCCAGCAGCTGCCATGGACCAGCCACATGTGATCCCCAGCCAGGGGGACCTGCTGGGTGACCTGCTGAACCTGGACCTGGGCCCTCCAGTCAATGTGCCCCAGGTCTCCTCCATGCAGATGGGGGCGGTGGACCTTCTGGGAGGAGGCCTGGACAGTTTGCTGGGGGGAGACCTGGGCGGCGGTGTTGGGGGAAGTCCAGCAGTGGGCCAGAACTTCATCCCCTCATCTGTCCCCAGTACGTTTGCTCCGTCCCCTACACCAGCTCCTCAAGCTGTCAGCAGTGGCCTTAGCGACTTGTTTGAGCTTTCCACAGGCATGGCCAACACCACTGGAGGCTATATTGCCCCAAAAGCCGTGTGGCTGCCTGCAGTGAAAGCCAAGGGACTGGAGATCTCTGGAACCTTCTCTCGCCGCCAGGGCCACATGTACATGGACATGACCTTCACCAACAAGGCCCTGCAACACATGACCGACTTCGCTGTCCAGTTCAACAAGAACAGTTTTGGGATGATCCCTACCAGTCCTCTGCCTGTTCACACTCCGCTGATGCCCAGCCAGACTATCGAGGTGTCTCTGCCTATCAACACCATTGGGCCAGTCATGAAGATGGACCCACTCAATAATCTGCAGGTGGCTGTGAAGAACAGCATCGATGTCTTCTACTTCAGCGTACTCATCCCTCTCAACATATTCTTTGTCGAGGATGGAAAAATGGAGCGACAGGTGTTCCTGGCTACCTGGAAAGACATCCCCAATGAAAATGAGCTACAGTACCAGATAAAGGAATGCCACCTAAATGCAGACACAGTATCAGGGAAGCTGCAGAATAACAACATCTTCACCATTGCCAAGAGAAACGTAGAAGGCCAGGATATGCTCTACCAGTCCCTCAAGCTAACCAACGGCATCTGGATCTTGGCTGAGCTCCGCATTCAGCCCGGCAACCCCAACTACACGCTGTCCCTCAAGTGTCGGGCCCCCGAGGTTTCTCAGTACGTGTACCAGACGTACGACGCTGTGCTGAAGAACTGACCTGCTCTCACACTTTGCAACTCTGCTTAATCCTGACAACAAACTGCAGTGTTTTATCCTTTTCTGCCATTTGCAGCTAACTGCCAAAACAAAGGAACCCAAACAGTAAATGATACTCAATAATTTGGAACATTGGGAGTGTTTTTCCTCTGAAGAGACCAACCAGGCAAAATGTTATACTGGATAAGTTGAACAGTACGAACACGGTTGACGTTTCCTTCGTTTTGGCAGTGGAAAGCGTTATTGAATCCACTTATTCAACTCCCCATTTTGATTTTCACCTCCCAGTGAAAACTTGTCTGCCATTCCATCCCTAACTCAGTGTCTCTAAATGTTGTAAAGATGTGACTGATGGTGAACCTGTGATGAGTGAAAACAAATCTCCCCAGTTTCCATGAAGccattgatttttattttgaacgCTGTATGGCTCACACTCCTTTTTtggttttgatttatttttgatatTGACTTTGCTTCAGTTGCACCTACAGAATAATACCAGGGTTGATTTGTTCCTTTTTGCCTTTTAATGTTTGTGAAGAGTCGAAACCAACAATGTGATCGTCAGAAGCTACTTACGTCTGTCCTGCAGCAGGTTATAGCTTATTTCTAGCGACATGCTAAATTAACCAACATTATAAATCACATTGAGCAGCATATGTACTCCTGTTTTTCCTGTCATGACTTTAACACAGCGTCTTGTATTTAATGGCATTACTTaaaatgtgtgcagtgtgtagaTAGAAAATACTTTTTCCTCCCTAAGTATGAAACTGTGCAgtaattggaaaaaaaactaacttcaAATGACATtccaaaacgttggaaaaagaaaagagcacCAGGAACTCTAATGTAACTACTAAATCCTGGCATTTTATTGCTGCTTCCCTCCTGTGAATTATGTTACTCACACTTTCCTGCCTGTCTCTTGCCTTTTGTGGTCCATCTGGAGACAGCTACGTCACAGGTGGTAAAACACAGAAGCAGGTCGCGCAAAGGTCTTAATCCGCTTTCAGCACACGCTGTCTTTAACactccacctttttttttacctcagttGACGTGAATGTCTTAGGaatatttagctttttttcttttcaatgtttttaatgctcaaattttaaaacaaatcgTAAAAACAGGTGACTAGGATGCACAAGAGCATTCTAAATGCAAAAAGCAATCAATTGTGAAATGCCATGCGAAGAAGCTTCAATGGAACGGTTTTGGCATAAAAGAGCAAATATTTACGTGATTATAAAGTCATGTtagaacaacaataaaaaaaaaatgcatccaGTGTGGTGAGGTTTCTGCAGGCTTGTTTAAGTGGAGGAACACAGAATGTCAGTAAAACAGACGGTCAAGACGCTTCTGACTGCAAGTAACGCACAGTACATTTCTTTAATTCCTGTTTAAATTGCAAGGTTGCCATTGTTTTCAAATTTGAAAAGTGTTCACTTATGAGTTTGGAACCACTACACAAACCACAGCAGCCACTGATTACGTGCTCACACAGCAGTGCCACTCTGTTTTAAGAACATTTGCTAGTTCATTTcacatgtatttctttttgtaATAGCCCCGTTTACTGCAACCACATCGTTTCACATGGCTTTACGCACCTATATTGTCATTCCTATTTATTGTGCATCTACCTCTGCTGTTTCCTTTTTTAACCGGCTTTATTGTGGCTGTAGCTTCCATTCTGTAATGTGCTTTAAATGGTGTCGCCTTTTCTTTTCATACCAGTGTTGTTTCTGTAATTTTCATGCCATTGTTGTCAAGCCAGTCTAAACCTGTGGCAAGTCAGGTGGACCAATCACACAGGACCAAGCAGTCACGCAAATTAAATGCCAAGCTTGTGTTTTAACACCCTAGTGTCAATATAATCTCCTAATGTTGGCTTTGTGTGTGCTATAGATCATAGGGTGCATACGCCCTAAGGCCCAGAGTTGGGCGAGTAAAGTGTAGTCCAGTGATGGTGTAGTTTATGTAgctaataaattaaaatgttttggtATTACCCTGAAAAGGAAATGAAGCCTTACTTCTATCTATTCAACAGAAAAGGCCCTTTCAGCGTAACAGTTGTGTTGGTGACACTATTTTCCTACATGGTaatgtaaaaatacatttatgtgCCTGCATGAACCCACTGTccattttatcctttttttttcatttaggctgTGGCTTTGCTCCATTTAAAAATGATTCTCCCAACTTCATGTCTCTGTTGTAGATCtcatgtttcatttttttttttttgagcggCGTTGTCTCCAGCACTCCCACACATAGAGGTATATCCACAACTTTTGCCAGCAATACAGAAAGTATGGTGAGAGCTATCTTATTCCTAGCATCATTACTGTAGCCCTGTTGTAAATGATTTGTTATTGTCACAGTACCACATCTTATgtcattaaaatgtcaaaaaca

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K11825 AP2B1; AP-2 complex subunit beta-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222485 lncRNA upstream 22066 8698232 ~ 8698973 (+) True G164163
TU222484 lncRNA upstream 24161 8696445 ~ 8696878 (+) True G164162
TU222463 lncRNA upstream 38985 8680133 ~ 8682054 (+) False G164156
TU222550 lncRNA downstream 57927 8803884 ~ 8804190 (+) True G164208
XR_005636510.1 lncRNA downstream 193856 8939813 ~ 8944602 (+) True LOC120544514
TU222610 lncRNA downstream 219425 8965382 ~ 8965767 (+) False bckdk
TU222609 lncRNA downstream 239680 8985637 ~ 8987592 (+) False bckdk
TU222650 lncRNA downstream 262767 9008724 ~ 9011611 (+) True G164293
XM_039778670.1 mRNA upstream 1800 8711261 ~ 8719239 (+) False mks1
XM_039778669.1 mRNA upstream 1800 8711263 ~ 8719239 (+) True mks1
XM_039778099.1 mRNA upstream 90178 8628410 ~ 8630861 (+) True LOC120544397
XM_039826492.1 mRNA upstream 152464 8545217 ~ 8568575 (+) True pou2f3
XM_039826355.1 mRNA upstream 210956 8463580 ~ 8510083 (+) True ppm1e
XM_039777147.1 mRNA downstream 907 8746864 ~ 8772111 (+) True LOC120543844
XM_039777148.1 mRNA downstream 14920 8760877 ~ 8772111 (+) False LOC120543844
XM_039777146.1 mRNA downstream 21609 8767566 ~ 8772111 (+) False LOC120543844
XM_039776703.1 mRNA downstream 27867 8773824 ~ 8779122 (+) False LOC120543578
XM_039776702.1 mRNA downstream 28024 8773981 ~ 8779122 (+) True LOC120543578
TU222462 other upstream 38985 8680133 ~ 8682054 (+) True G164156
TU222229 other upstream 425759 8292751 ~ 8295280 (+) False LOC120575583
TU222216 other upstream 520927 8197845 ~ 8200112 (+) False LOC120544209
TU222165 other upstream 643346 8074947 ~ 8077693 (+) True G163932
TU222136 other upstream 730506 7987175 ~ 7990533 (+) False G163910
unassigned_transcript_943 other downstream 5071 8751028 ~ 8751113 (+) True trnay-gua_52
TU222904 other downstream 1462214 10208171 ~ 10208658 (+) False G164466
TU222910 other downstream 1462214 10208171 ~ 10208658 (+) False G164466
TU222911 other downstream 1462214 10208171 ~ 10208658 (+) False G164466
TU222912 other downstream 1462214 10208171 ~ 10208658 (+) True G164466

Expression Profile