RNA id: XM_039777779.1


Basic Information

Item Value
RNA id XM_039777779.1
length 726
RNA type mRNA
GC content 0.46
exon number 4
gene id pfdn1
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 560344 ~ 568709 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAACAACGgcctcgcacatgcgcagtgtgtgtgtttctgcttcAGTGGTGGTGAACATGGCAGCGCCTATAGACCTGGAGCTGAAGAAGgcgTTCTCTGAGCTGCAGGTGAAGATGATCGACACGCAGCAGAAGGTGAAGCTGGCCGACCTGCAGATCGATCAGCTGACCCGCGTTCAGAAACATGCTAAGCTAACGCACGCGGAGGTCGCCGTGCTGGCGGACAACACGCGGCTCTACGAGGGAGTCGGACGCATgttcATTCTTCAGTCAAAGGAAGACATCAACAGTCAGCTGATGGACAAACAGAAAACAGCTGAGGAGAAAATCAAAGAGCTCGAgAAGAAGGTGTACCTTGAACGCAGCGTGAAAGAAGCTGAAGATAACATCCGAGAGATGCTGCTGTCCCGGAGATCTCACTGATCAATAACCAATCAGTGATCAGGAACCAATCACTGATCAGGAACCAATCACTGATCAGGAACCATCAAACAGAATGTGAGGATGTTCTCCAGGGTGGAGATGTATTGACTTGTATTTGGTTTAGTTAGTTTCTGCAGAATGATCAGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACGTGTAATAACATGTGTAATAACACGTTGATGTCTCTGTTTGCTAGTTGTTCATATTAAACTGTTGAACCTTCA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU219581 lncRNA downstream 6132 543704 ~ 554212 (-) False LOC120544218
TU219584 lncRNA downstream 6132 543704 ~ 554212 (-) True LOC120544218
TU219579 lncRNA downstream 14196 543704 ~ 546148 (-) False LOC120544218
TU219582 lncRNA downstream 14196 543704 ~ 546148 (-) False LOC120544218
TU219583 lncRNA downstream 14524 543704 ~ 545820 (-) False LOC120544218
TU219669 lncRNA upstream 23059 591768 ~ 600857 (-) True G162262
TU219721 lncRNA upstream 107956 676665 ~ 683561 (-) True G162293
TU219723 lncRNA upstream 138750 707459 ~ 708067 (-) True G162295
TU219700 lncRNA upstream 187012 755721 ~ 826383 (-) True G162278
TU219736 lncRNA upstream 196054 764763 ~ 765382 (-) True G162306
XM_039777841.1 mRNA downstream 1422 544282 ~ 558922 (-) False LOC120544218
XM_039777730.1 mRNA downstream 23392 508137 ~ 536952 (-) True oatx
XM_039777723.1 mRNA downstream 58240 473518 ~ 502104 (-) True pwwp2a
XM_039777725.1 mRNA downstream 98298 437951 ~ 462046 (-) False slc23a1
XM_039777743.1 mRNA upstream 1526 570235 ~ 578849 (-) False ttc1
XM_039777742.1 mRNA upstream 1526 570235 ~ 578849 (-) True ttc1
XM_039777843.1 mRNA upstream 22325 591034 ~ 632939 (-) True tmprss15
XM_039777844.1 mRNA upstream 67945 636654 ~ 663746 (-) True LOC120544220
XM_039777722.1 mRNA upstream 125556 694265 ~ 727005 (-) True LOC120544137
TU219576 other downstream 1452 547619 ~ 558892 (-) False LOC120544218
TU219661 other downstream 86375 471092 ~ 473969 (-) False pwwp2a
TU219544 other downstream 422957 124348 ~ 137387 (-) False LOC120544212
TU219526 other downstream 459652 94636 ~ 100692 (-) False ndufa2
TU219519 other downstream 536907 21716 ~ 23437 (-) True G162166
TU219693 other upstream 1543 570252 ~ 572002 (-) False ttc1
TU219748 other upstream 218062 786771 ~ 794731 (-) True G162311
TU219808 other upstream 548364 1117073 ~ 1118688 (-) True G162352
TU219825 other upstream 624093 1192802 ~ 1310616 (-) True G162358
TU219834 other upstream 627404 1196113 ~ 1201434 (-) True G162359

Expression Profile