RNA id: XM_039777827.1


Basic Information

Item Value
RNA id XM_039777827.1
length 1508
RNA type mRNA
GC content 0.57
exon number 3
gene id LOC120544211
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 6286906 ~ 6290324 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGACCTGACATGAACCAACGAAATATGAACCAGGAAGTGGCTCCTCGTGCCTGTTTTGCTAAAACTCTTGCGTGTTAAGACGTCACTGTATGTTAAAGCTAAGTAAAATAGgactacaaaaaaaaaggaatatcttcATACTACATTAACATCGAGCTACAAGATGGGTTTTGGACGTTGAAGTCGGTCGAGGATCGCTTGTTTTGGTCGCTGTCCGAGCAGCAGGTTTGTCTCGTCTAAATGTGAGCCGAAGCTGGAACAGCTTTTCGACATGTCGCCACCTCAGAAACATCACCTGTCGCACCTGCTGCTTCTCGCAGTCCTGCTGCCCTGGACGGCCGACGGGGCTAACAACGGGTCCGAGGCCGAGGCGGTGTCCTCCGCGCATCTGGCCGGGACCGGCGTCCACTCCGGCGGGGACGTTACGGTGAAGGAGGGATCCAGCGTGCTGATCGAGTGTAACGTGACCGCAGGCTACGATGACATCAAGTGGTACAACTCTAAAGGGCCTCTGCTTGGCGGGAAGTGGCAGATTCAGGAAGACGGAGCCCTGAACATCACCGAGGTCTCCTTCGGTGACCGCGGCCGCTACACCTGCGTTGCCTCTGGCGGCGCCGGCGTGACCAAAAACTACACCGTCACGCTCCGCGTGGCCCACAACACCAGCACCGGCCTGGGCCTGTACTACGTGATTGTCTGCCTGGTGACGTTCACCATCATCATGGCCCTCAACGTGACGCGCCTCTGCATGGTCAGCAGCCACCTGAAGAAGACCGAGAGGGCCATCAACGAGTTCTTCCGCACCGAGGGCGCCGAGAAGCTGCAGAAGGCGTTCGAGGTCGCCAAGCGCATTCCCATCGTCACGTCGGCCAAGACGCTGGAGCTCGCCAAGCAGACGCAGTACAAGACCATGGAGTTTGCGCGCCACATGGAGGACCTGGCCCGGAGCGTCCCTCTGCCGCCGCTCATCCTGCACTGCCGCACATCGGGGGAGGAGGGAGCCGAGGCGGGAAACCCGGGGCCGCACCCTGCGGAGCAGGCCGGGCCGTCGACCTCTAGGAACAGGCAAGCTATAGGCCCTCCCCACGCCGACAGGAACGGAGAGGGCGCGGAGGTGTGTCAGGCGCTGCTGTCAAATGGAGGGAACAGCGATGTCATAGTTTCAGTGCACACCGTTTCCGTGGAGGCGGACAGCGAGGATAGGGCGGGCCTCCGCGTGCCGGGCTCGCAAACAAGCGCGTCCTATGAGAGCAACGTATAAACCAGGGGTCAGCAACCTGAGGTGCGCGTCCCACCATTGGCTCGTGGTAGCGCAACCAATGGCACACCAGCAACAAAGTGGGGTCTTGAAAGAGGTCATTTGGCATGCGAATTGTGTGAATTAGAACATTTCCAAAAACGGAAATGACCTCTTTCAAAGCCATTAGCAGTTGGGATGggtaccaataccgtgacttcgataacggttcctaaacgatactttttttcaatacaaattttatgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221858 lncRNA downstream 31254 6255384 ~ 6255652 (-) True G163689
TU221800 lncRNA downstream 123631 6162584 ~ 6163275 (-) True G163643
TU221778 lncRNA downstream 603493 5683153 ~ 5683413 (-) True G163625
TU221777 lncRNA downstream 633248 5650699 ~ 5653658 (-) True G163624
TU221726 lncRNA downstream 652843 5633351 ~ 5634063 (-) True G163585
TU221864 lncRNA upstream 11360 6301684 ~ 6301977 (-) True G163694
TU221883 lncRNA upstream 78840 6369164 ~ 6370226 (-) True G163707
TU221887 lncRNA upstream 116788 6407112 ~ 6407385 (-) True G163709
TU221891 lncRNA upstream 260913 6551237 ~ 6556460 (-) True G163712
TU221894 lncRNA upstream 356912 6647236 ~ 6647570 (-) True G163715
XM_039826458.1 mRNA downstream 104945 6072218 ~ 6181961 (-) True LOC120575643
XM_039826452.1 mRNA downstream 472764 5658407 ~ 5814142 (-) True LOC120575636
XM_039826455.1 mRNA downstream 483567 5799038 ~ 5803339 (-) False LOC120575637
XM_039826456.1 mRNA downstream 485364 5799039 ~ 5801542 (-) True LOC120575637
XM_039826454.1 mRNA downstream 541375 5658506 ~ 5745531 (-) False LOC120575636
XM_039826349.1 mRNA upstream 38523 6328847 ~ 6363792 (-) True gemin5
XM_039826350.1 mRNA upstream 90735 6381059 ~ 6396327 (-) True LOC120575570
XM_039778150.1 mRNA upstream 1000272 7290596 ~ 7321787 (-) True rars1
XM_039777952.1 mRNA upstream 1040590 7330914 ~ 7398125 (-) True wwc1
XM_039777490.1 mRNA upstream 1168440 7458764 ~ 7471087 (-) True nop16
unassigned_transcript_940 other downstream 1483265 4803570 ~ 4803641 (-) True trnad-guc_15
unassigned_transcript_939 other downstream 1483944 4802891 ~ 4802962 (-) True trnad-guc_14
unassigned_transcript_938 other downstream 1485985 4800851 ~ 4800921 (-) True trnag-gcc_11
unassigned_transcript_937 other downstream 1487088 4799747 ~ 4799818 (-) True trnad-guc_13
unassigned_transcript_936 other downstream 1494177 4792659 ~ 4792729 (-) True trnag-gcc_10
TU221956 other upstream 966814 7257138 ~ 7286265 (-) True G163767
unassigned_transcript_941 other upstream 1691676 7982000 ~ 7982071 (-) True trnad-guc_16
unassigned_transcript_942 other upstream 2002083 8292407 ~ 8292518 (-) True trnal-caa_12
TU222295 other upstream 2056504 8346828 ~ 8352505 (-) True G164022
TU222314 other upstream 2085568 8375892 ~ 8380546 (-) False rabgef1

Expression Profile