RNA id: XM_039777830.1


Basic Information

Item Value
RNA id XM_039777830.1
length 1534
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC120544214
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10188536 ~ 10198514 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCACGCAGTTAAAACTCCAACGCACGCGCCACCTCTGTGTTCTCCAACACAGTGTGCAGGCAGTGTTCAGGTGCGGGTAAGAAGAGACCCACAACCCGCAAATACAGCAGGACGACAAGCGACCTGACTGCCTATCGATCGattattaattgattatcattGACTTAAGCCTGTCTGTGGATTTGAAATATGTCCAGCTGCATTGGACTGCACTAACGTTATACCATACCGGGGTCGGACACACATTCAACAGCGCAACCATGCCGTCTCTGCGACACTCGTACACGGTGACTTTACCGGAGGAAACACCGGCCGCTTTCCCCTTAGACAAACCCGAGCTGCGGCGAAAGAGTCCTTCGTTGTCCCGGTCCAAGCTGGTGTCCACATTCATGGGTCTAATCATCAACCAGGCCAAGAACAAGAGTCCTCAAGGCCTGGTGGGACTGAGGAACCTGGGCAACACATGTTTCATGAACTCCATCCTCCAATGTCTGAGTAACACTCGCGAGCTGAGAGATTACTGCCTTAGAAACATCCATCGAACAGACCTCAACAACAACTGCACGACCAACGTTGCTCTCATGGAAGAGTTTGCAAAGCTGACTCAGAGCCTGTGGACTTCTGTGAACAACGAGGCCATCAGTCCCTCTGATTTCAGGAGCCAGATCCAGAGATATGCTCCCAAATTTGTGGGCTGCAATCAGCAGGACGCCCAGGAGTTTCTGCGTTTCCTATTGGACGGTCTCCATAATGAGGTGAACAGAGTGACCGTACGACCTAAGATGTCTGTTGAAGACTTTGACCATCTTTCGGATGATGAAAAGGGCAAGTGGATGTGGAACATGTACTTGGAGAGAGAGGACAGCAAAGTAGTGGATCTGTTTGTTGGACAGCTGAAGAGCTCTGTGACCTGCACCGTCTGTGGCTTCCGCTCCACCGTGTTTGATCCATTCTGGGACCTATCCATACCGGTTGCACAGAAGAGCTCAGGCGAAGTGACTCTCAAAGACTGCTTGAGGCTCTTCACAAAAGAAGATGTGTTGGATGGGGAAGAGAGACCGacatGCAACAGATGCAAAACCAGAAGAAAATGCACCAAAAGATTCAGCATTCAGAAGTTCCCTCAGATCCTCGTGATTCACCTGAAGCGTTTCTCCGACTCTAACATCCGAACCAGCAAACTCTCCACGTATGTCAACTTCCCTCTCAAAGAGCTGGACCTGCGGGAGTTCGCCTCAGACAGCAGTGAGCGTGCGGTGTATAACCTGTATGCAGTATCCAACCACTCGGGAAATGCTCTGGGAGGCCACTACACATCCTACTGCAAGAACCCGGCGCTGGGGGAGTGGTACAGCTACAACGACTCCAGGTATCCACTCTCAAATCTACTCGCATGTGATCATATTACCATACCGTCTTATTAGATTGGCAGAAAGCTGTCTAATTATGCTGTATGCAGCAGCTGTAAAATGATCTCATTCTAACTGCATAAACGGGTGTCAACTTTATGGCTGTTTTTACGTAAAAGCTGTT

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11833 USP2; ubiquitin carboxyl-terminal hydrolase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222853 lncRNA upstream 26695 10161125 ~ 10161841 (+) True G164425
TU222855 lncRNA upstream 32759 10155340 ~ 10155777 (+) True G164427
TU222810 lncRNA upstream 58369 10129500 ~ 10130167 (+) True G164392
TU222809 lncRNA upstream 75312 10109662 ~ 10113224 (+) True G164391
TU222794 lncRNA upstream 520738 9666836 ~ 9667798 (+) True G164384
TU222894 lncRNA downstream 499 10199005 ~ 10199899 (+) True G164462
TU222908 lncRNA downstream 9665 10208171 ~ 10208658 (+) False G164466
TU222909 lncRNA downstream 9665 10208171 ~ 10208658 (+) False G164466
TU222924 lncRNA downstream 83614 10282120 ~ 10285258 (+) True G164475
TU222943 lncRNA downstream 276164 10474670 ~ 10475022 (+) True G164493
XM_039778519.1 mRNA upstream 9764 10118635 ~ 10178772 (+) True tecta
XM_039778512.1 mRNA upstream 9764 10144634 ~ 10178772 (+) False tecta
XM_039778513.1 mRNA upstream 9764 10150503 ~ 10178772 (+) False tecta
XM_039778518.1 mRNA upstream 52611 10110445 ~ 10135925 (+) False tecta
XM_039778516.1 mRNA upstream 52611 10118608 ~ 10135925 (+) False tecta
XM_039777041.1 mRNA downstream 21713 10220219 ~ 10254332 (+) True tlcd3a
XM_039776964.1 mRNA downstream 57397 10255903 ~ 10273987 (+) False LOC120543746
XM_039776966.1 mRNA downstream 57397 10255903 ~ 10272862 (+) False LOC120543746
XM_039776965.1 mRNA downstream 57405 10255911 ~ 10273987 (+) True LOC120543746
XM_039776967.1 mRNA downstream 76159 10274665 ~ 10280871 (+) True LOC120543747
unassigned_transcript_943 other upstream 1437423 8751028 ~ 8751113 (+) True trnay-gua_52
TU222462 other upstream 1506482 8680133 ~ 8682054 (+) True G164156
TU222229 other upstream 1893256 8292751 ~ 8295280 (+) False LOC120575583
TU222216 other upstream 1988424 8197845 ~ 8200112 (+) False LOC120544209
TU222165 other upstream 2110843 8074947 ~ 8077693 (+) True G163932
TU222904 other downstream 9665 10208171 ~ 10208658 (+) False G164466
TU222910 other downstream 9665 10208171 ~ 10208658 (+) False G164466
TU222911 other downstream 9665 10208171 ~ 10208658 (+) False G164466
TU222912 other downstream 9665 10208171 ~ 10208658 (+) True G164466
TU222990 other downstream 362137 10560643 ~ 10562266 (+) True G164531

Expression Profile