Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039778435.1 |
| length | 1301 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 1 |
| gene id | LOC120544567 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053127.1 |
| NCBI id | CM020924.1 |
| chromosome length | 37730433 |
| location | 4601695 ~ 4602995 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046982 | protein heterodimerization activity | molecular_function |
| id | description |
|---|---|
| K11251 | H2A; histone H2A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU221439 | lncRNA | downstream | 18108 | 4564029 ~ 4583587 (-) | True | G163390 |
| TU221418 | lncRNA | downstream | 20792 | 4559504 ~ 4580903 (-) | True | G163377 |
| TU221419 | lncRNA | downstream | 20792 | 4560029 ~ 4580903 (-) | False | G163377 |
| TU221420 | lncRNA | downstream | 21335 | 4559504 ~ 4580360 (-) | False | G163377 |
| TU221423 | lncRNA | downstream | 21335 | 4559504 ~ 4580360 (-) | False | G163377 |
| TU221464 | lncRNA | upstream | 3741 | 4606736 ~ 4660942 (-) | False | LOC120544552 |
| TU221469 | lncRNA | upstream | 26662 | 4629657 ~ 4648343 (-) | True | G163404 |
| TU221460 | lncRNA | upstream | 37516 | 4640511 ~ 4676792 (-) | False | LOC120544552 |
| TU221467 | lncRNA | upstream | 39541 | 4642536 ~ 4643420 (-) | True | G163403 |
| TU221440 | lncRNA | upstream | 46931 | 4649926 ~ 4665049 (-) | False | G163391 |
| XM_039778447.1 | mRNA | downstream | 106808 | 4494519 ~ 4494887 (-) | True | LOC120544579 |
| XM_039778436.1 | mRNA | downstream | 108364 | 4492120 ~ 4493331 (-) | False | LOC120544568 |
| XM_039778437.1 | mRNA | downstream | 127670 | 4473257 ~ 4474025 (-) | True | LOC120544570 |
| XM_039778424.1 | mRNA | downstream | 132761 | 4468200 ~ 4468934 (-) | True | LOC120544559 |
| XM_039778426.1 | mRNA | downstream | 135314 | 4465844 ~ 4466381 (-) | True | LOC120544562 |
| XM_039778444.1 | mRNA | upstream | 1060 | 4604055 ~ 4604643 (-) | True | LOC120544576 |
| XM_039778434.1 | mRNA | upstream | 24159 | 4627154 ~ 4628382 (-) | True | LOC120544566 |
| XM_039778415.1 | mRNA | upstream | 38842 | 4641837 ~ 4694616 (-) | True | LOC120544552 |
| XM_039778430.1 | mRNA | upstream | 114025 | 4717020 ~ 4750395 (-) | True | LOC120544564 |
| XM_039778431.1 | mRNA | upstream | 114025 | 4717020 ~ 4723954 (-) | False | LOC120544564 |
| TU221394 | other | downstream | 108344 | 4491005 ~ 4493351 (-) | True | LOC120544568 |
| TU221291 | other | downstream | 186264 | 4334843 ~ 4415431 (-) | False | G163315 |
| TU221281 | other | downstream | 186264 | 4367059 ~ 4415431 (-) | False | G163315 |
| TU221286 | other | downstream | 199954 | 4366499 ~ 4401741 (-) | True | G163315 |
| TU221342 | other | downstream | 297647 | 4302566 ~ 4304048 (-) | True | G163334 |
| TU221486 | other | upstream | 132333 | 4735328 ~ 4740789 (-) | False | LOC120544563 |
| unassigned_transcript_924 | other | upstream | 153666 | 4756661 ~ 4756732 (-) | True | trnad-guc_9 |
| unassigned_transcript_925 | other | upstream | 155443 | 4758438 ~ 4758509 (-) | True | trnad-guc_10 |
| unassigned_transcript_926 | other | upstream | 158431 | 4761426 ~ 4761496 (-) | True | trnag-gcc_2 |
| unassigned_transcript_927 | other | upstream | 159067 | 4762062 ~ 4762132 (-) | True | trnag-gcc_3 |
