RNA id: XM_039778513.1


Basic Information

Item Value
RNA id XM_039778513.1
length 8827
RNA type mRNA
GC content 0.50
exon number 21
gene id tecta
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10110445 ~ 10178772 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAACGGCATCCGCGGAGATGTGTTCTACCGAGAGACCACCGAACCGGAAATACTGGAAAGGGCAACCCAAGATGTCCGGAAGTACTTCAAAAACATGCCCACTTTCACAGCCACCTGGGCTTTTATTACAACATGGCACCAAGTCACCTTTTATGGAGGAAGCCAGACAACCCCGGTGAACACATTCCAAACTGTACTAATCTCAGATGGCGTGGCATCCTTCAGTATGTTCAACTACGGAGAAATCACATGGAGCACAGGAACAGCCAGTGGTGGAGATCCTTTAACAGGACTGGGTGGGACGACAGCTCAGGTTTTAATGGTGGAGACATTGGTCACTTCTTCAACCTGCCAGGATCACGGTCAAATGATGTAGTGAACATTGAACAGACAACCAATGTAAATACCCCTGGGCGCTGGTTGTTCCGCGTAGACACTGAACTGATAGATCCTGCCAATGGCTGCAGCTACAATGGTCGTTTTTACAGACGAGGGGAAATCTTCTGGCTGTCTGACCAGTGTTCACAGCGATGCCGCTGCCTTGACATTGACAACAAGGTGCAGTGCCAAGAGGCTCCGTGCGGGCAGCTGGAGACCTGCGAGCAGCAGGAAGGGGCTTTTTACTGCCAGCCGACCCGCACCAGCACTTGTGTGGTATTTGGCGACCCTCATTACCACACCTTCGATGGCTTCCTCTATCACTTCCAGGGAACCTGCTCCTACCTGCTGGCGCGGCCCTGCTGGGAGGTGGCAGGGCTGCCTTTTTTCAGCGTGGAGGCCAAAAATGAGAACCGTGGGGTCGCCTCTGTTTCCTGGCTTAGAGATGTCACAGTGGAGGTGTACGGTCACAGAGTCATGTTACCCAAAGGCAGTTTAGGAATGGTCCAGGTGGACGGCTTAATGAAGACTTTACCGGTCCAACTCCAGCTTGGTGCTATCAGGGTTTACCAGTCTGGGGTTGCCATTGCTTTAGAAACAGACTTTGGACTCATGGTAACCTATGACGGCCAACACTACGCATCCATCTCCCTACCCAGCTCCTACTTCAACAACACTTGTGGCCTTTGTGGTAACTATAACGACGACCCCGCTGATGATCCTGTGCTTCCTGACGGCTCTCTGGCCGAAAGCGTAGTGGAGCTAGGGGGCAGCTGGCGAGCCGAAGACACAGACTGGAGGTGTACAGATGGCTGCGCCCAGAACTGCAGCGTCTGTGACCCTCTTGTTGAAGCCTTCTACTTTCGCTCAGACTACTGTGGGCTCATCAACAAAACCGATGGACCTTTTAGGGACTGCAGAGCTGTAGTGGACCCCACAGCCTTTgtgtatagctgtgtatatgACATGTGCAGCAACAGGGATAATATCACCACACTCTGCCAGGCCATCCAGGCCTACGCTCTGGCCTGTCAGGCCCTCGGCGTCACGATACGATCCTGGAGATCTCGCACCTTCTGCGCTTTTTCATGTCCGGAGTTCAGCAATTACCAAGTGTGCACAAGTGCCTGCCCAGCCTCCTGCTCGGACCTCACCTCTCCCCTGTATTGTGCTCACCCTTGCACTGAGGGCTGCCAGTGTGACCAGGGCTACGTTCTCAGCGGCAGCCGTTGCGTAAAGCGCGAAGACTGTGGCTGTGAGCATAACGGCCTCTATTACCCCCGTAATAACACTTTCTGGGCAGGCCCCAGCGGTGAAGAAGGTGAATGTACCCTCCGCTGCACCTGCGGACCTGCTGGGGAAGTCTCCTGCTTCAACGAGTCTTGCAAGGAGGGGGAGGTGTGCGTGGCTGAGGTGGGCTTGTTGGGTTGTTACCCTCGGAGGGAGGGAGTGTGCTCAGTCACTCAAAACTCGGTGACGACCTCCTTTGATGGCACCTTCCTGCTGTTCCCAGATGACAGCTCCTACTACCTGCTGAAGCTGTGTGGCGCAGTGCCAGCTAACGGCTCAATGGTGGAGGTGAAGATGGGCAGGCGGCTGGTGAACAAAGGCCCCACTTGGAAAAGACCAGTGGTGGTTACAGTAGCTAACATGGAAGCTCAGATGGGAGGGATAGATTTTGACACAGTAAAGGTGAATGGTGAACCAGTGGCGCTCCCATATGTCCATCCAATGGAGACAATGATGATCTACAGAGCACCAGGCAATGCTACAGTAGTGGAGTCCCGCGGTCTGATTCGTGTCCAGTACTCTCACCAGGGATTCGTCAACATCTCCCTCTCCACCCTCTTCTACAATGTTACTTGTGGTCTATGTGGCGTCTTCAATAGCAATACCACTGATGACCTTCGCCTTCCAAACGGACGCCTGGCGGAGTCCACTGAACAGTTCACAGATGGCTGGCGGTCCATTGCCGATGACCTCACCTGCAATGGTGACTGCGATGACCTGTATCGAATGTGCACAGACTTGCGTCTCTACCAGAGTCCTTGGATGTGTGGCACCATCAATGATCCGGGGAATAGTTCATTTCTGGCATGTCATGCACTGGTGAACCCCTCACCGTTCTTCAGGAACTGCTTGTATAACATGTGTGTAAGGGAAGGGAATCGTTCAGCCCTGTGTTCTTCACTGCAGGCCTATGCCTCCGCCTGTCAGGATGCCCAAGTAGGCCTCGCTTCCTGGAGGAGTGTCACCAACTGCCCTCTTCCCTGTCCTCAGAACAGTCATTTTGATGAGTGCACGAGCGCCTGTCCTCTGACCTGTGCCAACTTAGATGAACCTGAAGAGCCGTGCCCTCTGCCATGCCAGGAGGGGTGTCAGTGTGAGGAAGGCTTTGCGCTTCGCGATGGCCTGTGTGTGGCACGCAGTGATTGTGGCTGCATGAGCCACGGACGCCAGCTGGCCACTAATCAGACTTTCTGGACAGACTGGGAGTGCCAGGAGCGCTGCTACTGCAATGGCTCCGACAACAGTGTATACTGTCAGCTCGCACCCTGTCACACTGAGGAGTACTGCCAGGAGAATGACGGCCTGTATTTCTGCCAGCCGCGCACTGAGGCCCTGTGTGTGGCTGCTGGTTATGGACATTTTCTGCCATTTGGTGGCGTACCGTTTGAGTTGCAGAGCTCTTGTTCTCTTAGGATGGCCACCACCAGCTGTGGCAGAGAAAGCAGGGAGCCCGCAACCATCAGTGGAACTTTCCCTCACTTTAAATTGGCAGCTCGTAATGAGGAAAGGGACACAGGCCAAGCAATTTGGGTGAGGGGCTTTGTTCTGGAGGTCTACGAGTATGAGATTGAAGTGTCTcgaagctacaaaaacactgtcACAGTGAATAAGGAGCGTTTGTACCCTCCACTGAAGCTGGGCCCAGGGAAGGTCAACATCTTCACCTGGGGCATGCACCTCATTCTGGAGACAGATTTTGGCCTGAAGGTGGCCTTTGACTGGAACACTCTCCTCCTGTTGACGTTGCCTCGCGATCTCTACAACAGCTCTTGCGGCCTCTGCCACGGCATGCCCTTATCCCCACCCACCCTTACCACCACTGACTGGGGCATGGCCTGGGCAGAGAGGGACACCTTCTGCCAGGTGGGCTGTGGAGACTCCTGCCCACGCTGTGGCCTGGGAGAGACGAGCGATCTAAATGACGCCCCTCTCATGGTGACTGATGCCAACATGAACACGGACAATGGGGCAAATGAAGTTGACACAGGCATACGTTTTCACATCGGAGATggactgtatgtgtttgtggagcctgaggCAGTAAGGCTGTGCGGGCTAATTGTGGATCGAGGAGGTTTATTTGCACGTTGTCATAGCAAGGTGGCGCCAGCGTTCTTTTATCAAAGCTGCCTGCAGGACACCTGTTTGGACCAGGGAGCTCAGGATACAATCTGTAACTGGCTGCAGATATACGCCGGCACCTGTCAGACCCAAGGTGTGCCTGTTACCGGCTGGAGGAGCGACACGCCATGTGTCCAGAGCTGTCCACCTAACAGCCATTACTCCAGTTGTGTGTCGGTTTGCCCGCCCCAGTGCGCCCCAGCCCGCGGCCAGAGGGACTGCAGCCAGGACTGTGTGGAGGGCTGTCAGTGTGACCAGGGCTACGTGCTCAACGGCAAGAGCTGCATCCTGCCTCAGAACTGTGGCTGCTACACTGATGGCAAGTACTATGAGCCCAAACAGCTGTTTTGGAACAGTGACTGTACCAAACGCTGCCAGTGCATCGGACGAAACCTGATCCAGTGCGACCCGAGGCGCTGTATAGCAGAGGAAGAGTGCACTCTGCGGCACGGAGTGCGGGGCTGCTTTGCGCGGCGCTCCCAGCACTGCGTGGCGTCTGGCGGTGGGGTTTTCAGGACCTTCGACGGGGCGTCGCTGCGGCTCCCGGCCTCCTGCTCCTTCGTCCTGTCCACAAACTGTCACAAGCTGCCTGACCTCTCCTTCCAGCTCATCGCTAACTTTGATAAATGGAGCACACCCAACCTCACCACCATCTCCCATGTCTACCTTTACATCAATGAGGAGAACATACTCATCTCTGGCAGCACTGTCAAGGTTAATGGTACACCAGTGTCGGTACCGTTTCTAACTGGGCTGATGACGCGTCTGTCCACGTCCGAAGGTTTCATTGTCATCGACACACCTCAGGACATCCAGATTCGATACAACCGCTTTAACACCCTTAGCATCACAATGGGCCAACGGCTTCAGAACAAGGTGTGCGGTCTGTGTGGGAATTTCAACGGAGACCCCAGTGACGACTACATCACTTCCAGGGGCAAGCCGGCTGTCAGCGCCCTGGAGCTGGCCCAGAGCTGGAAGACCAACGGTATGCAGAACAGTTGTGATGAAACCCAGTTTGTGGCTCTGGCTCAGTCCTGTGACAACACGGCGGTGCTGGCGCTGCAAAGTGAAGATGCGTGTCAGAAGCTCACCCAGCTGAAGGGCTTCTTCCAGCCGTGCCACGGCCTGCTGGATCCCCGGCCTTTCTACCAGTCCTGCTACCTGGACGGCTGCTACAATCACCGCAAGGCTCAGGTCTGCGGCTCGCTGGCAGCCTACGCAGAGGCCTGCCGCTCCATGGGCACCCTCACCACCAAGTGGATCACCCAAGAGAATTGCTCAGAATGGATCTACGACCCCTGTGCAGGAGAGATCTGCACAAACTTCACCTGTGAGCTGGAGAACGGAGGTGACCTGTGTGGCTGTCCAGAGTTGCCCACCAGCACTGGAGGTGATGATGACATCATCCAGGCGGAGGTGAACTGTAAGCATGCTCAGATGGAGGTCTCCATTTCCAAGTGTAAGCTCTTCCAGCTGGGCTTTGAACGAGAGGACGTCAGGGTCAACGACGAGCACTGCCCCGGCATCGAGGGAGAGGACCGCATCTCCTTTCGCATCAACAACACGAAGGGACACTGTGGCTCCATCGTACAGTCGAACAGCACACACATCATGTATAAGAACACCGTGTGGATAGAGAGTGTGAACAACACCGGGAACATCATCACCAGAGACAAGACCATCAACGTGGAGTTTTCCTGCGCCTACGAACTGGACCTGAAGATCTCCCTGGAGACTGTCCTCAAGCCCATGCTCAGTGTGATAAACCTCACCTTACCGACCCAGGAAGGAAACTTCATCACCAAGATGGCTCTCTATAAGAACTCCTCGTACCGAAACCCGTACAGGGAGGGGGAGGTGGTGCTCAGCACGCGAGACATCCTCTTCGTGGGTGTCTTTGTGGAAGGGGCCGATGAAAACCAGCTCATCCTCATAGTAAACATGTGCTGGGCCACGCCGTCCCGCTACAGCAGTGACCGACTCCGCTATATCATCATAGAGAGAGGGTGTCCAAACATTAAAGACAACACCATCGGCATGGCAGAGAACGGCGTGTCGCTCACCTGTCGCTTCCACGTCACCGTCTTCAAGTTCATCGGGGATTACGAGGAGGTCCACCTCCACTGTGACGTCACCCTGTGCGACTCGGAAACAAACGCCTGCAAAGTGAACTGTCCACACAAGAGAAGAATGTACTCGGAGGACAGTGACCATAAAGAGCACATATTGACTGTGGGACCCATTAGAAGGAGAGCATTAGACTGGTGTGAGGAGGGAAACGGAGGCTGTGAGCAGATCTGCACCAGTAAGATGGCCGGACCGGTCTGCAGCTGTGTGACTGGGATGCTGCAAAGAGATGGGAAAAGCTGCCGGACTGCGAGCTCGAGCTGTAACCTCACACCTGCGGTGTCTCTGCTGAGCGTCAGCGCTGTGATCTCCATGTTCCCGGCTCGTATTCACACTCTCCTCTCCTAACACTCTCTGCGAACAAAGGGAGGCAACAAATGAAAAGgaacaaaacacagaaaagacTTGAAGATGCACACAGTTTATCAGCGTTGATTAGCCAGTAGATCAGCTGTGTGTTCCAGTCAGAAAATCGAGACAGAATACACTGTGCATTCACAAATGTCTGAGGCCACATATTCTTGATGCAACTGAAGGTAACTACACAGACATGTAGACAAGTTTCACCCTAACTTCCCTAATTGTGTTATTCTCCGCCTCCTCCATTTTATATCAGGACACCTTATTGTGTATTATCATGTACTTAAAGCCACTATGTGTAGAATTTTTTTAATGTGATTATAACATATTTCAAATTATTCTGATGGCTTTTGTTTGAAGAAAAATGAATGCATTACTGTCTGCCACAGTGTCTTTTTTATACTACCACCAGATGGCGCCAACATAGAAATAGAAATGGTCTAATTCTTTACATTGCACTCAGAGAGCGCAGATCTCCGCCAAGGCGTGCCCCTAGCTCACAATATTAATGCAGTGGAAATTTCCCCAGTCAGAAACACACTTTTCTGATTAAtccgacaccacatgaatgcagcacaaacatTGCACAGTAATTTGTGTATCCGCCCCATGACTCGGGtccgctccaaaatgtaatgggttcttcctttgCCCATTCTACACCCTTCccccaagtttcatgaaaatatgGTTGGTAGTTTTTCTGAAATCTtgcggacagacagacagacagacagacaagcaaacaaacaaaaaaacggaCAAACCAAACATAGCCTAACCTCCATTGTGGAGGTGAATATGGTAGTGAACCAAAGACATTGGTGTTGAAGGCAAACATCATCCAATGTCCCAATCTCCACACCTGTACTTTACAATGCTATGAACACATTCTGCATTGGAACTGAAATTAAATCACGAACAGTTACAGCTAATAAATTGTTGCGTAATGGACATAATGTCTAGGAGTCAGAGTAGCATTATCTGGATACTGACATTTGCAATTACAcctgatattaataaacattcTCGTCATTTTGGTTCTACCCGCAATAAGGTCGGCAGATGGTAGACTTGTCAGCAAACATCTGTGACTGTGAGGGTCTAGctctccaaatccacaagagGCCTCAAGTGGAATATCTGGAGACTTCCTGTTAGAGCGGCTATATATGAAACAAATAGTCGTTTAAATGATTAGTAGATTAACAGAAAATGAACCGGCAACTATTTTGGTAACCGATTAATCAATTTATGTAGTTCTTTAAGCAAGAAGGCCAAACATTGtctagttccagcttcaccgtttTGAGGATTttctgtaaactgaatatctttggactTTAGACTGttagtcagacaaaacaagtacTTTATAATTTGAAGATGTGTGGTCGGGCTTTGCCtcgagaaaataatcatcaGATAAATCGATAAAGAAAACAATGATCACACCCAGCCCTAAAAAGCAGCAGTAGATTGTCTGTAGCGTTAAGAACAGTCAAAAATATCAGTTATTCTACATGGAAACAAGTTCAGCCTTAAGTTCCCTCTCACAGCACATTTTATCTGCTCATGGCCCAGCTCCCTAACAGACATGATAGAGTATGTGTAATCTGTAAAGATTCACTCTGcaagtatacagtatgtttttcttGTCCAGATAAGATACCCAAATACAAATTAATACCAGGTGTACATGGGCTCTGATAGTGGAATAAAAGTCTGCTGGACAGTGGATCTACTGGCTAGTATTAACCAGAGCAGAGCTGATCTATTAACTTCCTGTTTGACCTCCAGACTAACTAAATTACAGCATTTAACATTCTAAATCAACCAAATCTACGTCAGCTTGTGGCAGTAAAGAGGCTACGGATCAGGTAATGAGACTACACGGATGTCAAAGTGGAGttctttgaatgaagtgtgtgagGAGAGCACCTTAATATGAATACTCATATTTTTAACTCAAATGTTAAATAATGTCATACAGTAGATTAGTGCCCAGGTTGTGTTGCGACTGTAAGAAATGCAATTAGTTGTGCCATTAAAATATTGAATTTTTATCTTAATCAGTTGTAGTGTTGTAACACTCCTGTCACAAATATTGACTGTTGGCTCTGACGTATTGATTGCCTTTTAGGGTGGACATGTGAGGACATATTGTAAAACTGTCAATAGAGTAAGGTTCTCCAAGTAGGATCACTGGTCAGTGTTTTTTATTTGGCACcttatgtgtttttaatgtcaatATATATGTCACCACACATCTTATGTAACCCTTCAGTGTTCTTCACTGAAGCCAACTCAAATTCTCAGTTTTGCATTAGTTATACAGTAAGTAGCAGTTTTTCATAGGTAGGTCTGTTTTGCTACCTTCTATGTACAAATGTACAGTCCTTGTCTGTCAGTTTGGTGGTTTATGTcatgacttctttttttaataataatcagTATCTATTTTATGTTCAAAACCATTACCAaaatatgttttagtttttgagaGCAGAGCCACCCAACTTTTAATAAATTAAGTTCTCAAAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222810 lncRNA upstream 20336 10129500 ~ 10130167 (+) True G164392
TU222809 lncRNA upstream 37279 10109662 ~ 10113224 (+) True G164391
TU222794 lncRNA upstream 482705 9666836 ~ 9667798 (+) True G164384
TU222712 lncRNA upstream 831535 9305706 ~ 9318968 (+) True G164339
TU222709 lncRNA upstream 875090 9268980 ~ 9275413 (+) False G164336
TU222894 lncRNA downstream 20233 10199005 ~ 10199899 (+) True G164462
TU222908 lncRNA downstream 29399 10208171 ~ 10208658 (+) False G164466
TU222909 lncRNA downstream 29399 10208171 ~ 10208658 (+) False G164466
TU222924 lncRNA downstream 103348 10282120 ~ 10285258 (+) True G164475
TU222943 lncRNA downstream 295898 10474670 ~ 10475022 (+) True G164493
XM_039778518.1 mRNA upstream 14578 10110445 ~ 10135925 (+) False tecta
XM_039778516.1 mRNA upstream 14578 10118608 ~ 10135925 (+) False tecta
XM_039778515.1 mRNA upstream 14578 10118649 ~ 10135925 (+) False tecta
XM_039778514.1 mRNA upstream 14578 10118654 ~ 10135925 (+) False tecta
XM_039778517.1 mRNA upstream 14578 10118654 ~ 10135925 (+) False tecta
XM_039777830.1 mRNA downstream 9764 10188536 ~ 10198506 (+) True LOC120544214
XM_039777831.1 mRNA downstream 10114 10188886 ~ 10198514 (+) False LOC120544214
XM_039777041.1 mRNA downstream 41447 10220219 ~ 10254332 (+) True tlcd3a
XM_039776964.1 mRNA downstream 77131 10255903 ~ 10273987 (+) False LOC120543746
XM_039776966.1 mRNA downstream 77131 10255903 ~ 10272862 (+) False LOC120543746
unassigned_transcript_943 other upstream 1399390 8751028 ~ 8751113 (+) True trnay-gua_52
TU222462 other upstream 1468449 8680133 ~ 8682054 (+) True G164156
TU222229 other upstream 1855223 8292751 ~ 8295280 (+) False LOC120575583
TU222216 other upstream 1950391 8197845 ~ 8200112 (+) False LOC120544209
TU222165 other upstream 2072810 8074947 ~ 8077693 (+) True G163932
TU222904 other downstream 29399 10208171 ~ 10208658 (+) False G164466
TU222910 other downstream 29399 10208171 ~ 10208658 (+) False G164466
TU222911 other downstream 29399 10208171 ~ 10208658 (+) False G164466
TU222912 other downstream 29399 10208171 ~ 10208658 (+) True G164466
TU222990 other downstream 381871 10560643 ~ 10562266 (+) True G164531

Expression Profile