RNA id: XM_039778515.1


Basic Information

Item Value
RNA id XM_039778515.1
length 2392
RNA type mRNA
GC content 0.47
exon number 9
gene id tecta
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 10110445 ~ 10178772 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTCTTAAACTGTCAACTAACTgaagaacaacaaaaacaaacaccacaCCGAGGGGGTTCTGGGGACGGCAAAGACTGAACGTGTCCTGAGGGAGAAAACTCTAAAAATGGCTGCGACCATGGAGTCGTCCTCTGATGAAGAAGAGGGGTGCACCTTCATCCAAGTCCTGAGTGAGAAATACAACCCGGAGAATTTCCCCTACGGCCAAGGAGTAGTGGTAATGCCCAGCCCACCAGGGTCCCCTGTCAAAGGTCGCCTGTTCTTGCCCAATATGCTGGTTCTGAGTGATGCTGGAATCAGAAAAGCCGGTGACAGGTCAGACATTGCAGCGTTCTGTGCCCATGTGCTAGAGCTGGATCTGTCCCACAATCAACTTAACGACTGGGCAGAGATCTCCACCATTGTTTCCAACATCCCCCACTTGGAATTCCTCAATCTGAGCATGAACCCTCTGAGCGGCATAGAGCTGGAGCCCAGCATGGCTGAGGTGTTCTCCAGGGTCCGACAACTTGTCCTCATTAACACACAAGTCAGCTGGGACAccgtgcacacactcacacaacagGCACAAGAGCTGGAGGAGCTTTTCCTGTGCCTGAATGGCTACAACACCGTGTCAGAATCCCAGACGTCCTGTCCGTCACTACGCCTGCTGCAGATTACAGACAACCAGCTGAAGGAATGGGCAGAAGTGAGAAAGTTGGGGCAGATGTACCCGAGTCTGAAAACACTGATTCTGGCCAATAACCGTGTGGATTCTGTGAGTGACACTCGGGAAACACTGGAGCAGCTCTTCCCCAACCTGCGCACCATCAACCTCAATAACTCAGGGCTTAGTAAATGGGAGGACATTGAAAGGCTGGCTTTCTTCCCTAAGCTGGAGGACATAAAAGCAAAGGGGATTCCTTTACTGCAGCCTTACACCACCCATGAGAGACGTTGCCTCCTTTTAGCACAGCTGCCATCTGTAGTGTTGCTGAACGGAAGTGCAGTGtctgatggagagagagaggatgctgAGAGGCTTTTCATCCGGTACTACCAGGACTGCCCAGAACAGGAACTTCCTGAAAGGTACCACATCCTTGTATCCAAGTATGGTCAGTTGGCCCCGCTGGTGGAGGTGGACCTGAGCCCCCGCAGCACCATGGTGGATATTCGCTGGGGGGACAGGGTGGAGGCCGTCAGCCTCCGTCTGGAGCAGACGGTGGGCGACCTGAAGAAACACCTTCGAGCTCTGCTGCAGCTGCCCACCAGTGGGATCCGGCTCTTCTACATCGACAGGGAGATGTGTTCGGTCCTGGGACCTGAGGAGTTGAAGTGCAGCAGCCGCGCCCTCCATTCCTACCGAATCCGAGATGGGGATGAGATTGAAGTTGTGCCCAAAGTTAAAAGTCGCTGCAGCTCCTCAGATCTTTAAGTTCAGAGGCTCTCTGATTTTGGATGAATGGGACTTTAGGAATGCTAGATGAACACTTACTTGATACTAAGCTTTGACTTgagccttttattttttttttattttttttttagattaataGAAAAGGTGATATATTTCAGCCTTGAATGTAAAAGTGTTTGCTGTCCACCATATTGAACAAATCCATACAATAGTATATTTGCACATAGGAGTTCCACATTTACAAAGCTTGTATCCTAAGTCGCACATGTCTTTGCTTTAGTTGCTTAAGGTAAGACTGCAGTTTATATAACATTTATGAAAAATGTTTTGCAAATCCAAGATGGGCTGCAAATGGttctctgaaagaaaaaaacagcaattgAATGCATACATTGCACATTTAGGAACTGAAACTATTTTATAATTGTTTGTCTGACTTAGATTTGAGATTATAGGATGAAAACGTTTAACCTTGCTTCGACCACGCGTTCAGATGGAAATTGGATTTTAAAAATTACCAACTGCTGTGTTCATACATTCTGCCTTGGCTGGCTTTTCTGCACCCTAATAAGCAGCTCTTCGGTGTTTTTCAGCAATTAAGATTACTTTGAGGCCTGTGTGCTGGAACAGTGTCCTCTGGCAGCAGGGAGCACTGCAACTTTTTATGCCTGGGAGTAAACCGTTTGGGTGAAAATAATTCTAAACCAATTACTCCTTAAATGCCAACAATGGCTAACAATGAACCTTAAGCATGGAGCAATGATTGCAGCCAAGCTGACGTGCACAAAGTCTTTACATGCGTTTCAATTTCTGCATGTTGGTATTGCCAAGGATTTGTAACCTGGGTACAGTCTACATTTGCTTCACATACAAATAACTGTGggcaaaaaaaagagcagactGATCTCGTTAAGTggcatatgtatgacacgccaattcgtatgccattttggcatgttatcaagacgcataatcacttttttaacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU222809 lncRNA upstream 5425 10109662 ~ 10113224 (+) True G164391
TU222794 lncRNA upstream 450851 9666836 ~ 9667798 (+) True G164384
TU222712 lncRNA upstream 799681 9305706 ~ 9318968 (+) True G164339
TU222703 lncRNA upstream 843236 9268980 ~ 9275413 (+) False G164336
TU222855 lncRNA downstream 19415 10155340 ~ 10155777 (+) True G164427
TU222853 lncRNA downstream 25200 10161125 ~ 10161841 (+) True G164425
TU222894 lncRNA downstream 63080 10199005 ~ 10199899 (+) True G164462
TU222908 lncRNA downstream 72246 10208171 ~ 10208658 (+) False G164466
TU222909 lncRNA downstream 72246 10208171 ~ 10208658 (+) False G164466
XM_039778507.1 mRNA upstream 11282 10099871 ~ 10107367 (+) True LOC120544618
XM_039777290.1 mRNA upstream 42357 9661922 ~ 10076292 (+) False cadm1a
XM_039778512.1 mRNA downstream 8709 10144634 ~ 10178772 (+) False tecta
XM_039778513.1 mRNA downstream 14578 10150503 ~ 10178772 (+) False tecta
XM_039777830.1 mRNA downstream 52611 10188536 ~ 10198506 (+) True LOC120544214
XM_039777831.1 mRNA downstream 52961 10188886 ~ 10198514 (+) False LOC120544214
XM_039777041.1 mRNA downstream 84294 10220219 ~ 10254332 (+) True tlcd3a
unassigned_transcript_943 other upstream 1367536 8751028 ~ 8751113 (+) True trnay-gua_52
TU222462 other upstream 1436595 8680133 ~ 8682054 (+) True G164156
TU222229 other upstream 1823369 8292751 ~ 8295280 (+) False LOC120575583
TU222216 other upstream 1918537 8197845 ~ 8200112 (+) False LOC120544209
TU222165 other upstream 2040956 8074947 ~ 8077693 (+) True G163932
TU222904 other downstream 72246 10208171 ~ 10208658 (+) False G164466
TU222910 other downstream 72246 10208171 ~ 10208658 (+) False G164466
TU222911 other downstream 72246 10208171 ~ 10208658 (+) False G164466
TU222912 other downstream 72246 10208171 ~ 10208658 (+) True G164466
TU222990 other downstream 424718 10560643 ~ 10562266 (+) True G164531

Expression Profile