RNA id: XM_039826350.1


Basic Information

Item Value
RNA id XM_039826350.1
length 1948
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC120575570
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 6381059 ~ 6396327 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatcacactcaCCACCTGCCTGTCGGTCTCTCCATCTATTTGTTTGTGGACGCTAAAGACGACGAGAAGATCCACCATCTGAAGCTCTTGTTTGAAAATTGGTGCCATGGATGCAGCAGAGTTTCGACGCAGAGGGAAGGAGATGGTAGACTACGTGGCCAACTACCTGGCGAACATCGAACAGCGGCCGGTCTACTCCGACGTGAAACCGGGGTATCTTCGTTCCCTGATCCCCACTGAAGCCCCACTGGAGCCTGAGAATTATGAAGATGTTATTAAAGATGTGGAGAGGGTCATAATGCCAGGGgtCACCCACTGGCACAGCCCATACTTTTATGCCTACTTTCCAACTGCTAGCTCTTACCCTGCCATGTTGGCCGACATGCTGTGTGGAGCCATTGGCGGAATGGGATTCACCTGGGCTTCCAGCCCAGTCTGTACAGAGCTGGAGATAGTGATGTTAGATTGGCTGGGGAAGATGCTGAAGCTGCCTGAGCATTTTATAGCCGGGACTCATGGCCAAGGAGGAGGTGTAATTCAGGGCACAGCCAGTGAGGCAACCCTGATGTCAGTGCTCGCTGCCCGCTGTAAAGCAATCCAACAAGTCCAGGCTTCCAACCCTGGACAATCAGAGGCTGAAATCCTCCCCAAACTGGTGGCGTACACCTCAGAGCAGGCTCATTGCTCAGTGGAGCGGGCTTCTCTGATTGGAGGAGTAATGATGAGGAAGGTTCCTACAGACGACAATTATGCTGTCAGAGGGGGCATGTTTAAGAAGATGCTGGAGGAGGACAAAGCAGCTGGACTCATCCCTTTCTATTTGTGTGCGACCCTCGGCACGACGCCCTCATGTGGTTTTGATCACATCACCGAGCTGGGGCCCATATGTAATAAGGAAAATATGTGGATGCACATTGATGCAGCGTATGCAGGGAGTGCGTTCATCTGTCCAGAATTTAGGCCTTTGTTGAATGGCGTTGAGTTTGCAGACTCTTTCAACTTCAACCCACACAAATGGCTTTTAACCAACTTTGACTGCTCCACAATGTGGGTGAAGAATAGAGACGACATCATTGGAGTCTTCAAGAACAGTGATCAACCGTTCTACCTGAAACACGAACACCAGGAGTCAGgGCTGGTCACAGACTATAGGAATTGGCAGATTCCACACGGAAGAAGATTTCGCTCACTAAAGCTGTGGTTTGTCTTCCGTATGTATGGAATCCAAGGCCTGCAGGCTCATATACGCAAGCAAGTGGCCCTGGCCAAAGAGTTTGAAAGTCTGGTGCGAGCAGACAAGAGGTTCGAGATCTGTGCCGAGGTCATCATGGGACTGGTCTGCTTCAGGCTCAAGGGCTCCAATCAGCTGACTGAGCTCCTGCTTAAAAGGATCACCGAGAGCAGAGAGATCCACCTGGTGCCCTGCCAGCTCTCCGGCTGCTTTGTCCTGCGCTTCGCCATCTGCGCACGCACCACCGACTCAAAACACATCCAACAGGCGTGGCGGCACATCACGCAGCTGACCTTTGAGATCTTGCAGGAGCCCAATCATTAACCAGAAGGCTTGAAAGAGGCTGTCCACTCTGATGCTACAAATGATGGGCCAAAGTTAAGGCTGAGAttctaaggctacatttacattgccacgttttggttttaaaaacGAATATGTTTTACGCCTCGTATTCACACTGCTCTGGCACTTCAGAGCCTCTAAAGCGGagccatttcaaaacacttctgaccccgttttggtttggaatctgcgtgGTTGTTGTtcagtctcaacggccgcaaacggagacctttggcaacaccgacaATGTTTCGCCGCCTGATTGGGTCACAACGTCTcattctctgagactaagctactaacgttaccatggcaactaccagtaaacgagaatgttgatgagatattttggtttgggcgtgttagtttaaa

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01593 DDC, TDC; aromatic-L-amino-acid/L-tryptophan decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221883 lncRNA downstream 10833 6369164 ~ 6370226 (-) True G163707
TU221864 lncRNA downstream 79082 6301684 ~ 6301977 (-) True G163694
TU221857 lncRNA downstream 90201 6283369 ~ 6290858 (-) True G163688
TU221858 lncRNA downstream 125407 6255384 ~ 6255652 (-) True G163689
TU221800 lncRNA downstream 217784 6162584 ~ 6163275 (-) True G163643
TU221887 lncRNA upstream 10785 6407112 ~ 6407385 (-) True G163709
TU221891 lncRNA upstream 154910 6551237 ~ 6556460 (-) True G163712
TU221894 lncRNA upstream 250909 6647236 ~ 6647570 (-) True G163715
TU221896 lncRNA upstream 257058 6653385 ~ 6718138 (-) True G163716
TU221901 lncRNA upstream 391191 6787518 ~ 6787846 (-) True G163721
XM_039826349.1 mRNA downstream 17267 6328847 ~ 6363792 (-) True gemin5
XM_039777827.1 mRNA downstream 90735 6286906 ~ 6290324 (-) True LOC120544211
XM_039826458.1 mRNA downstream 199098 6072218 ~ 6181961 (-) True LOC120575643
XM_039826455.1 mRNA downstream 577720 5799038 ~ 5803339 (-) False LOC120575637
XM_039826456.1 mRNA downstream 579517 5799039 ~ 5801542 (-) True LOC120575637
XM_039778150.1 mRNA upstream 894269 7290596 ~ 7321787 (-) True rars1
XM_039777952.1 mRNA upstream 934587 7330914 ~ 7398125 (-) True wwc1
XM_039777490.1 mRNA upstream 1062437 7458764 ~ 7471087 (-) True nop16
XM_039777115.1 mRNA upstream 1230373 7626700 ~ 7782793 (-) False dbn1
XM_039777114.1 mRNA upstream 1230373 7626700 ~ 7782792 (-) False dbn1
unassigned_transcript_940 other downstream 1577418 4803570 ~ 4803641 (-) True trnad-guc_15
unassigned_transcript_939 other downstream 1578097 4802891 ~ 4802962 (-) True trnad-guc_14
unassigned_transcript_938 other downstream 1580138 4800851 ~ 4800921 (-) True trnag-gcc_11
unassigned_transcript_937 other downstream 1581241 4799747 ~ 4799818 (-) True trnad-guc_13
unassigned_transcript_936 other downstream 1588330 4792659 ~ 4792729 (-) True trnag-gcc_10
TU221956 other upstream 860811 7257138 ~ 7286265 (-) True G163767
unassigned_transcript_941 other upstream 1585673 7982000 ~ 7982071 (-) True trnad-guc_16
unassigned_transcript_942 other upstream 1896080 8292407 ~ 8292518 (-) True trnal-caa_12
TU222295 other upstream 1950501 8346828 ~ 8352505 (-) True G164022
TU222314 other upstream 1979565 8375892 ~ 8380546 (-) False rabgef1

Expression Profile