RNA id: XM_039826389.1


Basic Information

Item Value
RNA id XM_039826389.1
length 1809
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC120575591
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 12329957 ~ 12347052 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAACGTTTCCACCTTTACAAAGTGTGGCAGAAAAGCAGAGACCAGAAAAATACCAGAGGGAGACACTGAAGAGTTTGTGACCTTTAGGATCCATTCAGGTGCAGCAACTGATCTTTTTTCCCCAGACCTCCAGTAGCTGGAGCAGAGGGAGCACATTGGGGTTACAGAACAAGGTGTGTAGAGCAGTACTATGGGCAAGAAGGACAACGTATACGGATCTTGGAGCGATGGTGATGACCTCAAAACAGACGTTCATGCTGACAGAAAGACTGGAAGATTCAACCAGAGGACACCCGGCAGCTCCTTAGAAACTGGTAACTCGCCTGAAGACAACTCGCTCCCGCTTGAATGTGCTTTTCCTGGTGACATGGCTGTCACTGCTGATGATGATGGAGTGAAGAAGAGTCACGTAGGAAAGAGCTGCGAGGACAACGAAGAGGGACACCTGGACTATCACATCGGCCTTGTGATGAAAGAAAGATATGAGGTGGTATCCACACTGGGAGTAGGAGCCTTTGGAAAGGTTGTGGAGTGTATTGATAGAGACAAAAAGGACCACGTGGCTGTGAAGATTGTGAGGAACATTGAGTGTTTCTGTGAAGTAGCGAGGTCTGAGATCGCGGTGCTGGAGGAGATCAACATCCTGGATGATGACAACAGATTTGCCTGTGTGAAGATGCTGGACTGGTTTGAGCATGACGGTCACATCTGCATCGTGTTTGAGCTGCTCGGCCTCAGCACCTTTGAATTTCTCCGACAGAACAAGTTCCTGCCGTTCAACGTGGAGCAGATCAGACAAATGGCATTCCAGATCTTCAGAGCCGTCTGCTTCCTGCATCGTAACAAACTGACCCACACAGACCTGAAGCCAGAGAACATCCTGTTTGTCTGCTCTGACTACGACCTGGAGTACAACAATGTGATGGTAAAAgagtgtgaggagaggaaacTGAGGAGTTTTGATGTGAAAGTGGTGGATTTTGGCACCGCAAAATTTGACCACGAACACCATGAATCCGAGGTATCAACACGCCATTACCGAGCTCCAGAGGTCATACtggATCTGGGCTGGAACCAGTCTTGTGACGTTTGGAGTTTGGGCTGCGTCCTAATGGAGTTTTACCTGGGACGTACACTCttccagACCCATGACAGTAAAGAACATCTGGCCATGATGGAGAAAATCCTGGGACCGATTCCCCCCCACCTGCTGAAACAGACCAGAAAGGAGCATTATGTGCACAACGGGCGTCTGAATTGGGACGAGTCGAGCTCCACTGACGAATACATCTGGAAACACTGTATACCTCTCAAGCAGTCCATGCGCAAGAAGAGCGAGGAGGAGAGTCAGCTGTTTGACCTAATCGGCTGCATGTTGGAGTACGACGTCTATAGAAGGATCACCCTGGAGGAGGCACTATGGCACCCGTTCTTCAGCCCAATGAGGATGCAGAAGCCGCGCACACGCTAGCAcatgcatgaacacacacacacacacacacacacacacacacacacacacacacattcaacatATGCCTCAGGCTGTGAAGCAATGCAGTTACTAGACTGTTTGGGTTTGTAGTTCTGAGTTGATGAGTTGAAgattttcagtttcatttacAGTCATAACAGTTCTACAGAGCATTCCTGTCTACTTGAGATCAATTTGAAAACATGCCAACGTGATCCGTTTGCATGTCACTGTAAAGAAAGTCAAGTGTAATGCAGagtatttttattgtgttttcctTTATTGATTCTTAGTCATTTTTGTCAGCAGTTtgttaataaatattttacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223469 lncRNA upstream 22100 12305684 ~ 12311869 (+) True LOC120544113
TU223435 lncRNA upstream 238145 12095579 ~ 12095824 (+) True G164844
TU223391 lncRNA upstream 372080 11956806 ~ 11961889 (+) True klf8
TU223326 lncRNA upstream 590007 11743690 ~ 11743962 (+) True G164759
TU223316 lncRNA upstream 617430 11716325 ~ 11716539 (+) True G164750
TU223475 lncRNA downstream 7573 12348937 ~ 12352185 (+) True LOC120544195
XR_005636474.1 lncRNA downstream 7618 12348982 ~ 12352179 (+) False LOC120544195
TU223499 lncRNA downstream 116338 12457702 ~ 12468314 (+) True lcp2a
TU223508 lncRNA downstream 148310 12489674 ~ 12541314 (+) True G164894
TU223642 lncRNA downstream 253157 12594521 ~ 12594746 (+) True G165000
XM_039777685.1 mRNA upstream 25569 12294593 ~ 12308400 (+) False LOC120544113
XM_039826433.1 mRNA upstream 225501 12103785 ~ 12108468 (+) True zgc:158291
XM_039777961.1 mRNA upstream 376828 11865601 ~ 11957141 (+) False klf8
XM_039778473.1 mRNA upstream 492252 11836615 ~ 11841717 (+) True cldn2
XM_039777398.1 mRNA downstream 13027 12354391 ~ 12365162 (+) True slc25a14
XM_039777397.1 mRNA downstream 13674 12355038 ~ 12370867 (+) False slc25a14
XM_039777396.1 mRNA downstream 13675 12355039 ~ 12365162 (+) False slc25a14
XM_039826525.1 mRNA downstream 34536 12375900 ~ 12378914 (+) True btg4
XM_039826526.1 mRNA downstream 41453 12382817 ~ 12391830 (+) True LOC120575699
XR_005636532.1 other upstream 1309791 11013623 ~ 11024178 (+) False rcc1l
TU222994 other upstream 1753685 10572403 ~ 10580284 (+) False LOC120544459
TU222990 other upstream 1771703 10560643 ~ 10562266 (+) True G164531
TU222911 other upstream 2125311 10208171 ~ 10208658 (+) False G164466
TU223687 other downstream 453196 12794560 ~ 12797300 (+) True G165033
TU223701 other downstream 475867 12817231 ~ 12820709 (+) True G165043
XR_005636391.1 other downstream 2521297 14862661 ~ 14901003 (+) True gabra6b
TU224426 other downstream 3615116 15956480 ~ 15958135 (+) True G165556
TU224600 other downstream 4243778 16585142 ~ 16626346 (+) True G165702

Expression Profile