RNA id: unassigned_transcript_896



Basic Information


Item Value
RNA id unassigned_transcript_896
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnav-cac_1
representative True

Chromosome Information


Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 3416366 ~ 3416438 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCGGAAACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005636360.1 lncRNA downstream 51194 3363026 ~ 3365172 (-) False LOC120543535
XR_005636359.1 lncRNA downstream 52148 3363026 ~ 3364218 (-) True LOC120543535
TU220646 lncRNA downstream 69458 3344675 ~ 3346908 (-) True G162913
TU220758 lncRNA downstream 77256 3336511 ~ 3339110 (-) True G162981
TU220746 lncRNA downstream 108414 3289059 ~ 3307952 (-) True G162970
TU220796 lncRNA upstream 108754 3525192 ~ 3532195 (-) False LOC120543686
XR_005636382.1 lncRNA upstream 108760 3525198 ~ 3538835 (-) True LOC120543686
TU220798 lncRNA upstream 109088 3525526 ~ 3526278 (-) False G163017
TU220799 lncRNA upstream 109180 3525618 ~ 3526278 (-) True G163017
TU220800 lncRNA upstream 109180 3525618 ~ 3526278 (-) False G163017
XM_039826535.1 mRNA downstream 61813 3347620 ~ 3354553 (-) True LOC120575705
XM_039777882.1 mRNA downstream 183084 3208974 ~ 3233282 (-) True LOC120544249
XM_039777956.1 mRNA downstream 227346 3186153 ~ 3189020 (-) True LOC120544311
XM_039776996.1 mRNA downstream 330149 3070070 ~ 3086217 (-) True ncbp3
XM_039777007.1 mRNA downstream 371835 3037923 ~ 3044531 (-) True LOC120543772
XM_039776834.1 mRNA upstream 173873 3590311 ~ 3592122 (-) True LOC120543677
XM_039776833.1 mRNA upstream 181273 3597711 ~ 3599732 (-) True LOC120543676
XM_039776843.1 mRNA upstream 187006 3603444 ~ 3604114 (-) True LOC120543685
XM_039776832.1 mRNA upstream 209292 3625730 ~ 3639477 (-) False LOC120543675
XM_039776831.1 mRNA upstream 209293 3625731 ~ 3639477 (-) False LOC120543675
unassigned_transcript_893 other downstream 6488 3409806 ~ 3409878 (-) True trnav-cac
unassigned_transcript_892 other downstream 10264 3406030 ~ 3406102 (-) True trnav-aac_3
unassigned_transcript_891 other downstream 11108 3405187 ~ 3405258 (-) True trnad-guc_8
TU220739 other downstream 184362 3227870 ~ 3232004 (-) False LOC120544249
TU220727 other downstream 198811 3178767 ~ 3217555 (-) False LOC120544249
unassigned_transcript_899 other upstream 8175 3424613 ~ 3424685 (-) True trnai-aau_27
unassigned_transcript_900 other upstream 16068 3432506 ~ 3432578 (-) True trnav-aac_4
unassigned_transcript_901 other upstream 27408 3443846 ~ 3443918 (-) True trnaa-agc_20
unassigned_transcript_902 other upstream 36331 3452769 ~ 3452841 (-) True trnav-aac_5
unassigned_transcript_903 other upstream 38086 3454524 ~ 3454596 (-) True trnav-cac_2

Expression Profile