RNA id: unassigned_transcript_940



Basic Information


Item Value
RNA id unassigned_transcript_940
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnad-guc_15
representative True

Chromosome Information


Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 4803570 ~ 4803641 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221444 lncRNA downstream 81576 4581742 ~ 4721994 (-) False G163391
TU221482 lncRNA downstream 98784 4692762 ~ 4704786 (-) True G163415
TU221445 lncRNA downstream 116194 4649926 ~ 4687376 (-) False G163391
TU221446 lncRNA downstream 116494 4650347 ~ 4687076 (-) False G163391
TU221460 lncRNA downstream 126778 4640511 ~ 4676792 (-) False LOC120544552
TU221504 lncRNA upstream 2849 4806490 ~ 4814371 (-) True G163423
TU221526 lncRNA upstream 85994 4889635 ~ 4889841 (-) True G163444
TU221529 lncRNA upstream 98422 4902063 ~ 4902317 (-) True G163447
TU221532 lncRNA upstream 139535 4943176 ~ 4943391 (-) True G163450
TU221538 lncRNA upstream 352196 5155837 ~ 5156159 (-) True G163456
XM_039778427.1 mRNA downstream 53140 4735214 ~ 4750430 (-) True LOC120544563
XM_039778430.1 mRNA downstream 53175 4717020 ~ 4750395 (-) True LOC120544564
XM_039778429.1 mRNA downstream 63641 4735214 ~ 4739929 (-) False LOC120544563
XM_039778431.1 mRNA downstream 79616 4717020 ~ 4723954 (-) False LOC120544564
XM_039778432.1 mRNA downstream 79770 4717020 ~ 4723800 (-) False LOC120544564
XM_039777871.1 mRNA upstream 176778 4980419 ~ 4981366 (-) True LOC120544239
XM_039777919.1 mRNA upstream 249714 5053355 ~ 5054317 (-) True LOC120544283
XM_039777920.1 mRNA upstream 258394 5062035 ~ 5062985 (-) True LOC120544284
XM_039777921.1 mRNA upstream 270115 5073756 ~ 5074691 (-) True LOC120544286
XM_039777925.1 mRNA upstream 278869 5082510 ~ 5083454 (-) True LOC120544289
unassigned_transcript_939 other downstream 608 4802891 ~ 4802962 (-) True trnad-guc_14
unassigned_transcript_938 other downstream 2649 4800851 ~ 4800921 (-) True trnag-gcc_11
unassigned_transcript_937 other downstream 3752 4799747 ~ 4799818 (-) True trnad-guc_13
unassigned_transcript_936 other downstream 10841 4792659 ~ 4792729 (-) True trnag-gcc_10
unassigned_transcript_935 other downstream 16241 4787258 ~ 4787329 (-) True trnad-guc_12
TU221956 other upstream 2453497 7257138 ~ 7286265 (-) True G163767
unassigned_transcript_941 other upstream 3178359 7982000 ~ 7982071 (-) True trnad-guc_16
unassigned_transcript_942 other upstream 3488766 8292407 ~ 8292518 (-) True trnal-caa_12
TU222295 other upstream 3543187 8346828 ~ 8352505 (-) True G164022
TU222314 other upstream 3572251 8375892 ~ 8380546 (-) False rabgef1