RNA id: TU232744


Basic Information

Item Value
RNA id TU232744
length 324
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G171718
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 567019 ~ 567342 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctgagctcagcagggagtgcagcaggaccacggcgacagctgcaaccagggtcttggtgccaacgttctccaaggaaatacgctgggggaaaaaaaaagcataaggactccggggagtaaactccccagaagctaggattagtaacaagcatttctgggacgggctgcacacaaatagtaatagtaatagtaacagtaatagaaacagtaatagaaagggagaggagagagcagctcagtgtgtcaaaggaaggaagtcccccggcagtctaggactataacagcgtaactataacaggtaactaagagagacaggtcataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232700 lncRNA downstream 47949 518840 ~ 519070 (-) True G171680
TU232694 lncRNA downstream 86868 479794 ~ 480151 (-) True G171674
TU232649 lncRNA downstream 271734 295066 ~ 295285 (-) True G171636
TU232606 lncRNA downstream 495221 71037 ~ 71798 (-) False LOC120546083
XR_005636784.1 lncRNA downstream 495228 71010 ~ 71791 (-) True LOC120546083
TU232745 lncRNA upstream 2959 570301 ~ 570904 (-) True G171719
TU232754 lncRNA upstream 32204 599546 ~ 600048 (-) True G171728
TU232770 lncRNA upstream 105130 672472 ~ 684728 (-) False LOC120545599
TU232771 lncRNA upstream 105130 672472 ~ 745412 (-) True LOC120545599
XR_005636714.1 lncRNA upstream 105372 672714 ~ 745410 (-) False LOC120545599
XM_039780834.1 mRNA downstream 2237 533379 ~ 564782 (-) False nek6
XM_039780833.1 mRNA downstream 2237 533379 ~ 564782 (-) True nek6
XM_039780443.1 mRNA downstream 107743 458084 ~ 459276 (-) True LOC120545827
XM_039780464.1 mRNA downstream 224642 302496 ~ 342377 (-) False mapkap1
XM_039780465.1 mRNA downstream 224642 302496 ~ 342377 (-) True mapkap1
XM_039779351.1 mRNA upstream 28551 595893 ~ 621737 (-) False LOC120545215
XM_039779353.1 mRNA upstream 28551 595893 ~ 605140 (-) True LOC120545215
XM_039780127.1 mRNA upstream 57618 624960 ~ 659720 (-) True crb2a
XM_039780105.1 mRNA upstream 185070 752412 ~ 846555 (-) True slc12a2
XM_039780106.1 mRNA upstream 186559 753901 ~ 846977 (-) False slc12a2
TU232928 other upstream 602861 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 1029174 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 2417480 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 3319246 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 3574511 4141853 ~ 4147755 (-) False cdk9

Expression Profile