RNA id: TU232974


Basic Information

Item Value
RNA id TU232974
length 1516
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G171886
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 1184173 ~ 1193912 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagggagggagaaggagggatggagagaggacagagagagagaaaatagagagaaacagggagagagagagagaaataaaagagaaacagagagatagagagggagggagaaggcgggatggagaaagaaggagagagagaaaaagagagagagagagacagagagagagggaaggagaaggagggatggagagaggacagagagagagggagggagagagagagagaggcagaggtaaagaaaaagagacagagggaaagagagagggagggaggcctgtagcctgtagtatctgggtgtgtctgtgaaagtgttgtcatggtaacgaatggccagtggatatgtttataaacatgatttgatgtctgtaatcaagttgatgagcaacacctgctgaatctgtcagctgtgctgtgctgcagctattcagagtccctgagagctctcaaacaaagcctcacagtggcaaaacgataactactatcagtcaaatgacgtgatcctgagcaccacaaggcctgtgtgaacgtatcggtataaaatttatatggataaacgtaaaaatgtggtcatatcagcgatttcaaaaagtggtttgttcagtgtttcgctgggaaatatctaggagtttgatcattggaTTCAATGAagaacgatatggacatcttgtcatttggaagctcaaccagccaaaagtaaaaggcgtatcacaaaactgagcagattttctgaaactagacaaaaatacctacgttttgatctataaattgtgtatgacaagtagaaaatgtgggcgtgagagcaatttaaGCAGCAGggacaaagacattttttttaaggctctgtgctctagctatgatgtcatccactctaagcagcgcaatacacaccctgtttaatcgataaaatttcctgaaatgatcactaaacttaaacagctttttaacaaaaactgtaaaaggtatcaaaatgaaaagcacaagccggatagctgaatattttgtgaacattttaaagtttgtttgatgtctgtaggtgaaagtatgaaggagctgaaaattttgggagtggaagaagattttaaggagttgaatgctgctctcattcacttcaatgttaaaaaaaagtgttaaaaagcttaaaatttaaaaaagtataaatagtagaaaaaaagttgaagaagtcccatcattagctgaaagagctgaacatttgaaaagttgaatggtttaaatcggtggaagtatgcagaagttacagagagccaaaaaacgtacggaataaaacgaaaaagaataataaagaacaggataacaataggtggaatgctgtagaacagcattcccccaataacaataggtggaatgctgtagaacagcattcccccaataaagaaccgaataacaataggtggaatgctgtagaacagcattcccccaaaaataaagaaaatggccgacagaaacaacaataggtggaatgctgtaaaacagcattcccccaataaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232911 lncRNA downstream 143122 1040798 ~ 1041051 (-) False megf10
TU232906 lncRNA downstream 145363 1038339 ~ 1038810 (-) True G171848
TU232904 lncRNA downstream 146647 1036831 ~ 1037526 (-) True G171846
TU232895 lncRNA downstream 174746 1008831 ~ 1009427 (-) True G171839
TU232878 lncRNA downstream 186219 994471 ~ 997954 (-) False prrc1
TU232976 lncRNA upstream 6768 1192570 ~ 1193912 (-) False G171886
XR_005636741.1 lncRNA upstream 18429 1204231 ~ 1207353 (-) True LOC120545753
TU232986 lncRNA upstream 42426 1228228 ~ 1283125 (-) True G171893
XR_005636707.1 lncRNA upstream 69362 1255164 ~ 1256010 (-) True LOC120545526
TU233051 lncRNA upstream 148021 1333823 ~ 1371734 (-) True G171949
XM_039778833.1 mRNA downstream 270 1174528 ~ 1183903 (-) False LOC120544936
XM_039778834.1 mRNA downstream 270 1174528 ~ 1183903 (-) False LOC120544936
XM_039778832.1 mRNA downstream 270 1174528 ~ 1183903 (-) False LOC120544936
XM_039778830.1 mRNA downstream 270 1174528 ~ 1183903 (-) True LOC120544936
XM_039778831.1 mRNA downstream 270 1177249 ~ 1183903 (-) False LOC120544936
XM_039780306.1 mRNA upstream 206962 1392764 ~ 1423159 (-) False syk
XM_039780304.1 mRNA upstream 206962 1392764 ~ 1423159 (-) True syk
XM_039780305.1 mRNA upstream 206962 1392764 ~ 1423041 (-) False syk
XM_039779188.1 mRNA upstream 320752 1506554 ~ 1522474 (-) True reep5
XM_039779782.1 mRNA upstream 469546 1655348 ~ 1715953 (-) True nrg1
TU232928 other downstream 13384 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 410714 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 1799020 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 2700786 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 2956051 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 3585015 4770817 ~ 4771303 (-) True G172920

Expression Profile