RNA id: TU233066


Basic Information

Item Value
RNA id TU233066
length 222
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G171960
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 1369246 ~ 1373758 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctatataaaagagacttcagatacagtattaggggaccactaaggtctatagaaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattagggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattagggaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232986 lncRNA downstream 86121 1228228 ~ 1283125 (-) True G171893
XR_005636707.1 lncRNA downstream 113236 1255164 ~ 1256010 (-) True LOC120545526
XR_005636741.1 lncRNA downstream 161893 1204231 ~ 1207353 (-) True LOC120545753
TU232976 lncRNA downstream 175334 1192570 ~ 1193912 (-) False G171886
TU232974 lncRNA downstream 183444 1184173 ~ 1185802 (-) True G171886
TU233063 lncRNA upstream 4484 1378242 ~ 1457614 (-) True G171959
TU233065 lncRNA upstream 4484 1378242 ~ 1457614 (-) False G171959
TU233062 lncRNA upstream 77449 1451207 ~ 1457614 (-) False G171959
TU233096 lncRNA upstream 119473 1493231 ~ 1494317 (-) True G171986
TU233097 lncRNA upstream 121077 1494835 ~ 1496527 (-) True G171987
XM_039778834.1 mRNA downstream 185343 1174528 ~ 1183903 (-) False LOC120544936
XM_039780306.1 mRNA upstream 19006 1392764 ~ 1423159 (-) False syk
XM_039780304.1 mRNA upstream 19006 1392764 ~ 1423159 (-) True syk
XM_039780305.1 mRNA upstream 19006 1392764 ~ 1423041 (-) False syk
XM_039779188.1 mRNA upstream 132796 1506554 ~ 1522474 (-) True reep5
XM_039779782.1 mRNA upstream 281590 1655348 ~ 1715953 (-) True nrg1
TU232928 other downstream 198457 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 222758 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 1611064 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 2512830 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 2768095 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 3397059 4770817 ~ 4771303 (-) True G172920

Expression Profile