RNA id: TU233388


Basic Information

Item Value
RNA id TU233388
length 235
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G172235
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2341626 ~ 2342031 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTCCTCCTCGTCCATCTGCTCGCCGTGCTGCACGATCTTCTGCTCCCAAAACGACTTCAGCTTCTGTTTGTCGTGAATCCGAGCTGCGTTCATCGCTGCTGTTTTCCAGCTTGTCCTTTTCTCTCCtttatctttttgtcttttctctcctcttctatTTCACTTATCAGTAATTCCTCATCTCTTCTGttctcccccccttttttttacatCTCTTTATGTTACTCGTCTCCT

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0060048 cardiac muscle contraction biological_process

KEGG:

id description
ko05200 Pathways in cancer
ko05217 Basal cell carcinoma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233382 lncRNA downstream 11656 2329685 ~ 2329970 (-) True G172231
TU233317 lncRNA downstream 244462 2090423 ~ 2097164 (-) True G172180
TU233288 lncRNA downstream 251647 2089713 ~ 2089979 (-) True G172151
TU233287 lncRNA downstream 258384 2082808 ~ 2083242 (-) True G172150
TU233243 lncRNA downstream 394721 1946644 ~ 1946905 (-) True G172111
XR_005636609.1 lncRNA upstream 63744 2405775 ~ 2406868 (-) True LOC120544955
TU233440 lncRNA upstream 307427 2649458 ~ 2729174 (-) False G172283
TU233441 lncRNA upstream 307427 2649458 ~ 2655894 (-) True G172283
TU233445 lncRNA upstream 466943 2808974 ~ 2809467 (-) True LOC120545025
XR_005636620.1 lncRNA upstream 467042 2809073 ~ 2809530 (-) False LOC120545025
XM_039780463.1 mRNA downstream 61815 2253897 ~ 2279811 (-) True dcp2
XM_039780448.1 mRNA downstream 88671 2179488 ~ 2252955 (-) True LOC120545833
XM_039780032.1 mRNA downstream 182575 2145367 ~ 2159051 (-) True hmgcs1
XM_039780033.1 mRNA downstream 183265 2148495 ~ 2158361 (-) False hmgcs1
XM_039780446.1 mRNA downstream 268520 1948903 ~ 2073106 (-) True tln1
XM_039780568.1 mRNA upstream 127144 2469175 ~ 2807464 (-) False dcc
XM_039780567.1 mRNA upstream 127144 2469175 ~ 2807464 (-) False dcc
XM_039780566.1 mRNA upstream 127144 2469175 ~ 2807464 (-) False dcc
XM_039780565.1 mRNA upstream 127144 2469175 ~ 2807464 (-) True dcc
XM_039780659.1 mRNA upstream 826595 3168626 ~ 3246890 (-) False mbd2
TU233144 other downstream 739470 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 1170837 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 642791 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 1544557 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 1799822 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 2428786 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 2507917 4849948 ~ 4897357 (-) False odf2a

Expression Profile