RNA id: XR_005636620.1


Basic Information

Item Value
RNA id XR_005636620.1
length 347
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id LOC120545025
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2808974 ~ 2809530 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACCTTCCTGCACGGCAGCTGGCAATCCTGCAATCACCTGCTGCTCAGCTGTTGCTGATTCCCCTGATCACGGCTGCAGTATTTAGACTCGGTTGGAACCTGTCTTTGGCGCCATATCGTTACAGCTACCAAAGTGACCTACACCACCCGACCTGTTGCCTTTGGACCGCTGTTCCGCCAGCCGTTCGTTTCTCAGACCTATCTCCCTGCTTGGATTCCTGTGAGAGTTGTTTTGGACACGCTACACTCTGCCCACGCCCGCTGCAGTCCTGTGCACCTGTGCAGCTAACTGTCCCTGGCTGCTTTGTTTGTCCTGTGACGATCATTAAAAGACTTTCGAAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233440 lncRNA downstream 79899 2649458 ~ 2729174 (-) False G172283
TU233441 lncRNA downstream 153179 2649458 ~ 2655894 (-) True G172283
XR_005636609.1 lncRNA downstream 402205 2405775 ~ 2406868 (-) True LOC120544955
TU233388 lncRNA downstream 467042 2341626 ~ 2342031 (-) True G172235
TU233382 lncRNA downstream 479103 2329685 ~ 2329970 (-) True G172231
TU233454 lncRNA upstream 63326 2872856 ~ 2873112 (-) True G172295
TU233474 lncRNA upstream 177679 2987209 ~ 2987606 (-) True G172312
TU233475 lncRNA upstream 178407 2987937 ~ 2988216 (-) True G172313
TU233504 lncRNA upstream 342531 3152061 ~ 3152756 (-) True G172342
XR_005636762.1 lncRNA upstream 349741 3159271 ~ 3167356 (-) True LOC120545949
XM_039780568.1 mRNA downstream 1609 2469175 ~ 2807464 (-) False dcc
XM_039780567.1 mRNA downstream 1609 2469175 ~ 2807464 (-) False dcc
XM_039780566.1 mRNA downstream 1609 2469175 ~ 2807464 (-) False dcc
XM_039780565.1 mRNA downstream 1609 2469175 ~ 2807464 (-) True dcc
XM_039780463.1 mRNA downstream 529262 2253897 ~ 2279811 (-) True dcp2
XM_039780659.1 mRNA upstream 359096 3168626 ~ 3246890 (-) False mbd2
XM_039780657.1 mRNA upstream 359096 3168626 ~ 3246887 (-) True mbd2
XM_039780656.1 mRNA upstream 359097 3168627 ~ 3246887 (-) False mbd2
XM_039780658.1 mRNA upstream 359097 3168627 ~ 3246884 (-) False mbd2
XM_039780653.1 mRNA upstream 468019 3277549 ~ 3281952 (-) True LOC120545955
TU233144 other downstream 1206917 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 1638284 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 175292 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 1077058 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 1332323 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1961287 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 2040418 4849948 ~ 4897357 (-) False odf2a

Expression Profile