RNA id: TU233475


Basic Information

Item Value
RNA id TU233475
length 280
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G172313
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2987937 ~ 2988216 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcaagcaccatcatacctagaagagctcttagtaccttattgtcccactagagcactgcgctcccagaatgcggggctacttgtggttcctagagtctctggaagtagactgggggccagggccttcagctatcaggctccgcttctgtggaaccagctcccagtctgggttcgaggggcagacaccgtcaccacatttaaaagtaaattgaaaaccctcctctttgataaagcttatagttagggagtgaggagttgcagcgtccacctaacccggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233474 lncRNA downstream 331 2987209 ~ 2987606 (-) True G172312
TU233454 lncRNA downstream 114825 2872856 ~ 2873112 (-) True G172295
XR_005636620.1 lncRNA downstream 178407 2809073 ~ 2809530 (-) False LOC120545025
TU233445 lncRNA downstream 178470 2808974 ~ 2809467 (-) True LOC120545025
TU233440 lncRNA downstream 258763 2649458 ~ 2729174 (-) False G172283
TU233504 lncRNA upstream 163845 3152061 ~ 3152756 (-) True G172342
XR_005636762.1 lncRNA upstream 171055 3159271 ~ 3167356 (-) True LOC120545949
TU233616 lncRNA upstream 337550 3325766 ~ 3327234 (-) True G172432
TU233624 lncRNA upstream 369909 3358125 ~ 3358520 (-) True G172439
TU233628 lncRNA upstream 374531 3362747 ~ 3363219 (-) True G172443
XM_039780568.1 mRNA downstream 180473 2469175 ~ 2807464 (-) False dcc
XM_039780567.1 mRNA downstream 180473 2469175 ~ 2807464 (-) False dcc
XM_039780566.1 mRNA downstream 180473 2469175 ~ 2807464 (-) False dcc
XM_039780565.1 mRNA downstream 180473 2469175 ~ 2807464 (-) True dcc
XM_039780463.1 mRNA downstream 708126 2253897 ~ 2279811 (-) True dcp2
XM_039780659.1 mRNA upstream 180410 3168626 ~ 3246890 (-) False mbd2
XM_039780657.1 mRNA upstream 180410 3168626 ~ 3246887 (-) True mbd2
XM_039780656.1 mRNA upstream 180411 3168627 ~ 3246887 (-) False mbd2
XM_039780658.1 mRNA upstream 180411 3168627 ~ 3246884 (-) False mbd2
XM_039780653.1 mRNA upstream 289333 3277549 ~ 3281952 (-) True LOC120545955
TU233470 other downstream 2677 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1385781 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 1817148 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 898372 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 1153637 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1782601 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1861732 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1861732 4849948 ~ 4897357 (-) False odf2a

Expression Profile