RNA id: TU233624


Basic Information

Item Value
RNA id TU233624
length 396
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G172439
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3358125 ~ 3358520 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacattttctgaatcgtccACCACTATTTCCCAGCCTCAATTCTGTCTTCACATCATATTCACCACAGCTCGTCTTTTGTACGTGTGTAGAGATTGACCGTGCGCTCTCGCATTTTTGAACAGTTCTCACATGCGTGCACACTCTCGAGCCCCGAGCCAATGCTAAAACACGTACATCTGACTTAAAGCAACTTATTCTAttatgactttattctcgaaatATTATGACTTCATTCTtgaaaactgatttttttttttttataatacttACTAATACTAATATGCGGCTGATTTGCAGAGTTTACTCCAGTCCTTCCCCCACAGCAGCAGACAGCTCTCCCTGCACTatgagtacgtttacatgcacactaatatttCACTATTattcaatattat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233616 lncRNA downstream 30891 3325766 ~ 3327234 (-) True G172432
XR_005636762.1 lncRNA downstream 190769 3159271 ~ 3167356 (-) True LOC120545949
TU233504 lncRNA downstream 205369 3152061 ~ 3152756 (-) True G172342
TU233475 lncRNA downstream 369909 2987937 ~ 2988216 (-) True G172313
TU233474 lncRNA downstream 370519 2987209 ~ 2987606 (-) True G172312
TU233628 lncRNA upstream 4227 3362747 ~ 3363219 (-) True G172443
TU233629 lncRNA upstream 4997 3363517 ~ 3370798 (-) True G172444
TU233656 lncRNA upstream 101825 3460345 ~ 3463100 (-) True G172468
TU233694 lncRNA upstream 159489 3518009 ~ 3518953 (-) True G172504
TU233697 lncRNA upstream 181755 3540275 ~ 3547689 (-) True G172507
XM_039780653.1 mRNA downstream 76173 3277549 ~ 3281952 (-) True LOC120545955
XM_039780659.1 mRNA downstream 111235 3168626 ~ 3246890 (-) False mbd2
XM_039780844.1 mRNA upstream 105382 3463902 ~ 3475242 (-) False june
XM_039780847.1 mRNA upstream 105382 3463902 ~ 3475166 (-) True june
XM_039780845.1 mRNA upstream 105382 3463902 ~ 3474909 (-) False june
XM_039780846.1 mRNA upstream 105382 3463902 ~ 3466763 (-) False june
XM_039778739.1 mRNA upstream 125205 3483725 ~ 3505303 (-) False LOC120544885
TU233470 other downstream 372865 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1755969 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 2187336 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 528068 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 783333 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1412297 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1491428 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1491428 4849948 ~ 4897357 (-) False odf2a

Expression Profile