RNA id: TU233628


Basic Information

Item Value
RNA id TU233628
length 396
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G172443
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3362747 ~ 3363219 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGTTAAAATTAAAGGAATAAACAAGCTAAAAGTCGGTGTTGGCAATTCACCATGCGCACCAAAAGCCAGCAACAACAGTGCCAAGCAGTAGCGACACGCTGTGTAGTTCGCGGCCAAAACAAAGCTGTGCAGTTAGCAGCCGAGGCACAGCAGCAGACAAGGCTGTGTAGTTAGCAGCAGAGAAAGCTGTACAATTAGCAGCATTTAGCAGTGGAGACAAAGGCAGACCAAGCAGCATTTAGCAGTGGAAACAAAAGCAGACCAAGCAGCATTTAGCAGTGGAGACAAAACAGCAGCGGCCCCAATCAGCTGGTGGTGGAATCACCTCAATCACCACCGGTAGACTTCGGCCAGCTGATGAGCATTCCCTGTTTTCAAAGTCAAACCTGCACag

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233624 lncRNA downstream 4227 3358125 ~ 3358520 (-) True G172439
TU233616 lncRNA downstream 35513 3325766 ~ 3327234 (-) True G172432
XR_005636762.1 lncRNA downstream 195391 3159271 ~ 3167356 (-) True LOC120545949
TU233504 lncRNA downstream 209991 3152061 ~ 3152756 (-) True G172342
TU233475 lncRNA downstream 374531 2987937 ~ 2988216 (-) True G172313
TU233629 lncRNA upstream 298 3363517 ~ 3370798 (-) True G172444
TU233656 lncRNA upstream 97126 3460345 ~ 3463100 (-) True G172468
TU233694 lncRNA upstream 154790 3518009 ~ 3518953 (-) True G172504
TU233697 lncRNA upstream 177056 3540275 ~ 3547689 (-) True G172507
TU233740 lncRNA upstream 304709 3667928 ~ 3668180 (-) True G172549
XM_039780653.1 mRNA downstream 80795 3277549 ~ 3281952 (-) True LOC120545955
XM_039780659.1 mRNA downstream 115857 3168626 ~ 3246890 (-) False mbd2
XM_039780844.1 mRNA upstream 100683 3463902 ~ 3475242 (-) False june
XM_039780847.1 mRNA upstream 100683 3463902 ~ 3475166 (-) True june
XM_039780845.1 mRNA upstream 100683 3463902 ~ 3474909 (-) False june
XM_039780846.1 mRNA upstream 100683 3463902 ~ 3466763 (-) False june
XM_039778739.1 mRNA upstream 120506 3483725 ~ 3505303 (-) False LOC120544885
TU233470 other downstream 377487 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1760591 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 2191958 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 523369 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 778634 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1407598 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1486729 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1486729 4849948 ~ 4897357 (-) False odf2a

Expression Profile