RNA id: TU234957


Basic Information

Item Value
RNA id TU234957
length 1248
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G173550
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 7377127 ~ 7378374 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGAAGTGGTTACCAGAGCCACACGGAATCTGTGGACGCAGAACTctgcagattttaaacaaataaataaaaactccaaactTTAACACATCTTCATCCTAAGCAGAAAAACTGTCTACTAAATTCTCCAGATTTTCATATTGAGAACTGTATAATCTGCAGATTCCGTTTGGGTCTGCTGATTACACTAAATCATCAGTGTCAGCCGATCAGTAGTTTTAGCAGTTGTCAGCTCTGCTGTAATAAACAATATGTTACTTCCTGGTTAAAATGTTATCCAAAGACAGAACCAAAAAAAAGCAtatcttaaaggtgcagtaggtaagacttataaagctaactttctgtcatatttgctgaaactgaccctatgttccagtagaactacatgaagcaggtaataaaaaataaaaataaattcagctcctctggcaccacctacagcctgtagtgtgatttgcaaaaatccaccgcttcctgttcagatgcaccaatcagggccaggggggtcgTCTAACTGCCTGTCAattactgctcatgcacacgcattcattctcccttgtgggtgGAGGGGCTGACAGGCTGAGGAGTTTtaggctttagcagaaaggggggggagggactgagaagttgttgatgttcaatttatttggctaaatcctggattctcccaatcctacctacggcacctttaagatGGCATTTATTACAGATTTAACAAAAATACAGAAAGGTaatcagtgagctttagaggtagggctgggcaatatatcgatattatatcgatatcttgatatgagactagatattgtctaagattttggatatcataatgtcgtgataagacagaagtgctgtattacagtaaagtgatgtacttttctgaacttaccagactgttctagctgttctattatttgccttttccccacttagacatatCTACAACACTGATGATTGTTTATCttaaatctaagtgtgaagatagtttgttagagcaccaattgtcaaccctagaatatcgctgcaatatcgatattgaggtatttggtcaagaatatcgtgatatctgattttctccgtatcgcccagccctatttagAGGTGTGTGTATTTGGACAGAAGCAGACTGTTCCCCTCCCTTCCAGCCTCTAAGCTGCCTCCTGTAGCTTCTTATTTGACAGACAGATGTGATAGTGGTTCCTATCTTCGCATTTAAATCAAATGTCAGACACTATGTGCACgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234924 lncRNA downstream 82701 7294030 ~ 7294426 (-) True G173526
TU234851 lncRNA downstream 214910 7161724 ~ 7162217 (-) True G173467
TU234793 lncRNA downstream 877980 6498867 ~ 6499147 (-) True G173418
TU234785 lncRNA downstream 881228 6455597 ~ 6495899 (-) True G173410
TU234726 lncRNA downstream 1002638 6374205 ~ 6374489 (-) False LOC120544971
TU234961 lncRNA upstream 98167 7476541 ~ 7477005 (-) True G173554
TU234969 lncRNA upstream 109223 7487597 ~ 7487905 (-) True G173561
TU234972 lncRNA upstream 157991 7536365 ~ 7536616 (-) True G173564
TU234983 lncRNA upstream 250167 7628541 ~ 7628753 (-) True G173573
TU235059 lncRNA upstream 446313 7824687 ~ 7825279 (-) True G173638
XM_039780067.1 mRNA downstream 15182 7324542 ~ 7361945 (-) False LOC120545581
XM_039780065.1 mRNA downstream 15182 7324542 ~ 7361945 (-) True LOC120545581
XM_039780066.1 mRNA downstream 15338 7324542 ~ 7361789 (-) False LOC120545581
XM_039780068.1 mRNA downstream 16728 7324542 ~ 7360399 (-) False LOC120545581
XM_039778912.1 mRNA downstream 79206 7295509 ~ 7297921 (-) True LOC120544992
XM_039779919.1 mRNA upstream 2070 7380444 ~ 7393965 (-) True kcnv2a
XM_039779920.1 mRNA upstream 18680 7397054 ~ 7466061 (-) True vldlr
XM_039779922.1 mRNA upstream 18680 7397054 ~ 7466060 (-) False vldlr
XM_039779921.1 mRNA upstream 18680 7397054 ~ 7466059 (-) False vldlr
XM_039778810.1 mRNA upstream 100755 7479129 ~ 7522091 (-) False sh3bp2
TU234856 other downstream 217040 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 556261 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 1976449 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 2479770 4849948 ~ 4897357 (-) False odf2a
TU235162 other upstream 979349 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 1247108 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 1691788 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 2464438 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 2482627 9861001 ~ 9874345 (-) False grin1a

Expression Profile