RNA id: TU235083


Basic Information

Item Value
RNA id TU235083
length 2907
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G173661
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 7909371 ~ 7912301 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATTTGTTACACTTGATCAGTTATAACGCAGTAACTTTACAAATTTGCATGAAATGTATGCCAACCAGAAAGCAActgaaaaatacaaacttatgcactcaaaaagaaaaaacactgacTGAGCATAAGACTGACAATTCAAATTATTTCGGCTGTCGGCTCTGAAAACATTTCAAagtttagaaaataaataaaaaaaaatagggtaTGCTATGTTAATGGCATCAAAAGAATAAGCATCCAATATTTTCAGGTGATCATTTTACATGCCATGCTGCATTTTACTTTTCATGTGTTGGCACAGACATGATATATGAACCCCAATAAGGCTGAGTATAAAAAAAGGCTGAGTTTCTTATCAGTTAAATAACATTTTCCATGTGGCAATATTGACCGTAAAGCCTGAAAAAGGAATGAAAACATTATGAAAAGCATACAAAAATGTTGGATTCATAAAAGGAACATTCACAGAGTAGATATGACCTGATTTTATCAAAATGAAAGCTTTTGATATGTACAAGATGATAAGAAGGAACCATGTGACGGTACAATTAAATGTACTCTTATTTAAAGCTTATTTCAATATTTTCTATGTGAACACTGAACTAAATGACTACCTATAATGTCAAAGATGGGACTCCTAGTGACAAAACCACAGAAAATTGCCACCAACTCTGCAACTCTTTAGAGCTTTTTAGCCTGTTTTGGCTTATAGCACCAAACTGCAGACACTCAAAATGagtgactagctggtgaagACTGTAGAGCATTTAGCTGCTAGAAGAGACAAATATTTTTCAGAAACCAAACCAGACGAGTTAAAggagagtaaatattggacaTTAGACAGAAATTTGACTCCAAATGATAGGGAcggcatcgagaaccggttaCAACTTGGAGTCGTTTCAAACATTATGTTTCCAATggaatatttagttttttttaatgaaatcgTTTCGAAAATTTGGTTTAGAATCTGATCATCAGATCCAAGTTTAATGCGCAAGTTTGGGATTTCCGTAGCGGCCAACGTACTTCCGTgggcttgttgtgttgcagttagggctttaaattgacacccGCCAAATGCGGGTAAAAGTAAACTTTGGTgggtaacattttaaagtaccTAGCCAATTTGGCTGGTGATGAATGAAGCGAGGTGTCTGTTTGAATCGGCAGGGTGCAGAAACGATGCGACAAGTCAGTGTTTCCGGATTGATCTCTTTTCTGCCAAGAAATTTGGGacggttttgtgtgtttttgcctTGGAAAGGTAATATTTATCTGACAACACTGCTTGTGGTgctaatcctacatttcccatgaacagTAAGTTGTGATGTGTCAGACAACTGTTAGCCACGTGCCTAGCGATTACGAGCTACGCTGAAAAGGATAAGACGAACGGAACCAAACAAACCACTCGGGCTGAAACTACAGTAAAGTTAgttaggcaaaaaaaaaaaaaaaaaaacgtggctAGTggtaaatctgattggctggttaATTAAAAAATCTACAAgccatgttggctggtgattaaaaaagttaatttaaagccctggttGCAGTCagcgtggctttattttacatagaAAAAGCCCAGTAAAACTGCAAATCACCCTTGAATCAAAATACCATTTTCCTCTCATCTGTGAAATGAGCATGTGGCCCGATTCAACTCCATCCCTCAGAGAATCGGAattgataagaaccggaatccaAAAGAAGAATCAGAATTGGAATTGTTAGAATCCAAACGATGCCAAACCCTATGAATGATAGACTTTCTCTTTGCCATTTTGCTGAAAAAAAACCCCCACATTTTTACATGCTCTTCCATCCCTCATACCAAACCTGCAACTAACCCTTTACAGCCATGTCGGGGTGGTGGGGGGTGGACAGAGGTGGTGGCAGCTGGCAGGACAGGCACAGATGTCCTCCAAGTATTTTAGGAGACCTGATATTCAACACTCAACCTTGGGCCCCCTTAATAGTCACTCTCCGAGACTGTTCCTAAGCTTATCCGTGCCTTGGATTGAAAAGTCTTAACTTTATGCAAGTTCACCGCTGACCTAGGGCGTGATGCTTCCCATAAGCTCAGGGGTCAGGTAGCCGCCTGGCGTCGGCATGACTTTTGGGATTACCAGCTGGGGGGCTGGTGTCGAGTTGGGAGTCAGTAAAAGGCTGTTCTGCCTGTCGACACCCTCGACCACGGTGTAGACCGGCGCGGGGGAAAGAGGGGACATGGGGGTGCCATCCGATTCGCGGGATGGTGAATAGCTCAAGTCTCCGCCTGTCTGGCAGGGTTCGCTCGTGTCTCCCGTGGACAATCCAGGGCTCATTTTCCCTGCGTTGAGCTCTGAGGTGTAACCGGCGGGATCCGGATTCACCAccaggagccggaactggtttttgtctttctcGGTGTCTCGGCTAGTCTGTTCCTCGGGCGACAGCAGCACTTTGCCAGAAGGCCTCACCTCGCTCACTTTGGTGTACAGCGCCTCTCGGCCCGGTGCTACAGACCGAGGCTCCCCGGTTGTGGGGCTCTGGACCGGGGGGCTCGGCTCGCAGGCGGTCGGGCGCGACGGGTCCTCGCATCGGGTTTGGTTTGGGATCAGACGAATGAACGGCGACGCTTCCGGCTCGCTGGGGAGATCGGGGTCACAGCAGCTGGCCCGGCCCGAGTCGTCGTTGTCTCTGAAGCCGATGGACAGGGGAGAGTTGCCGGAGGACAGCGAGCGCTCCACCAGACGGTCCGTGTCCAGGTCCGTCAGTCGCTCGTTCTGCTCCTCTATGTCCAGGTCGATGAATTCCACCCACGGGTCGTTGTAGTACAGCTCCGGCCTCAGATCAGGAGGGCCGCCCAGGATGGATGTCAACTCCCGCAGCTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235059 lncRNA downstream 84092 7824687 ~ 7825279 (-) True G173638
TU234983 lncRNA downstream 280618 7628541 ~ 7628753 (-) True G173573
TU234972 lncRNA downstream 372755 7536365 ~ 7536616 (-) True G173564
TU234969 lncRNA downstream 421466 7487597 ~ 7487905 (-) True G173561
TU234961 lncRNA downstream 432366 7476541 ~ 7477005 (-) True G173554
TU235095 lncRNA upstream 29287 7941588 ~ 7944249 (-) True G173673
TU235119 lncRNA upstream 175866 8088167 ~ 8088441 (-) True G173689
TU235135 lncRNA upstream 318358 8230659 ~ 8230858 (-) True G173704
TU235145 lncRNA upstream 369384 8281685 ~ 8289130 (-) True G173713
TU235184 lncRNA upstream 520701 8433002 ~ 8438975 (-) True G173744
XM_039780129.1 mRNA downstream 42763 7847724 ~ 7866608 (-) True c7b
XM_039778913.1 mRNA downstream 126895 7780288 ~ 7782476 (-) True htr1ab
XM_039780862.1 mRNA downstream 229219 7664258 ~ 7680152 (-) False parm1
XM_039780861.1 mRNA downstream 229219 7664258 ~ 7680152 (-) True parm1
XM_039780870.1 mRNA downstream 268882 7635420 ~ 7640489 (-) True scpp8
XM_039778728.1 mRNA upstream 34561 7946862 ~ 7948604 (-) True gadd45gb.1
XM_039780470.1 mRNA upstream 148146 8060447 ~ 8073342 (-) True LOC120545849
XM_039780614.1 mRNA upstream 186558 8098859 ~ 8202622 (-) True LOC120545930
XM_039780082.1 mRNA upstream 471214 8383515 ~ 8388610 (-) True LOC120545589
XM_039778956.1 mRNA upstream 578805 8491106 ~ 8530029 (-) True LOC120545024
TU234856 other downstream 749284 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 1088505 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 2508693 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 3012014 4849948 ~ 4897357 (-) False odf2a
TU235162 other upstream 445422 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 713181 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 1157861 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 1930511 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 1948700 9861001 ~ 9874345 (-) False grin1a

Expression Profile