RNA id: TU235119



Basic Information


Item Value
RNA id TU235119
length 275
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G173689
representative True

Chromosome Information


Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 8088167 ~ 8088441 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGCTGTCTCCagtgttcacagacattttcaacacCTCACTGGAGACATGTCACGTGCCAGCCTGCTTCAAGACCTCAACCATCATCCCTGTCCCCAAGAAGCCAAGGACCACAGGACTTAATGACTTCGGACCCGTCgccctgacctctgtggttatgaagtcctttgagcgccttgtgctttcacacctcaAAGCCATCACCGACAccctcctggaccccctgcagtttgcctacagagCCAATAGGTCTGTAGATGATGCAGTCAACCTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235095 lncRNA downstream 143918 7941588 ~ 7944249 (-) True G173673
TU235083 lncRNA downstream 175866 7909371 ~ 7912301 (-) True G173661
TU235059 lncRNA downstream 262888 7824687 ~ 7825279 (-) True G173638
TU234983 lncRNA downstream 459414 7628541 ~ 7628753 (-) True G173573
TU234972 lncRNA downstream 551551 7536365 ~ 7536616 (-) True G173564
TU235135 lncRNA upstream 142218 8230659 ~ 8230858 (-) True G173704
TU235145 lncRNA upstream 193244 8281685 ~ 8289130 (-) True G173713
TU235184 lncRNA upstream 344561 8433002 ~ 8438975 (-) True G173744
TU235209 lncRNA upstream 367323 8455764 ~ 8468380 (-) True G173761
TU235213 lncRNA upstream 389915 8478356 ~ 8479247 (-) True G173765
XM_039780470.1 mRNA downstream 14825 8060447 ~ 8073342 (-) True LOC120545849
XM_039778728.1 mRNA downstream 139563 7946862 ~ 7948604 (-) True gadd45gb.1
XM_039780129.1 mRNA downstream 221559 7847724 ~ 7866608 (-) True c7b
XM_039778913.1 mRNA downstream 305691 7780288 ~ 7782476 (-) True htr1ab
XM_039780862.1 mRNA downstream 408015 7664258 ~ 7680152 (-) False parm1
XM_039780614.1 mRNA upstream 10418 8098859 ~ 8202622 (-) True LOC120545930
XM_039780082.1 mRNA upstream 295074 8383515 ~ 8388610 (-) True LOC120545589
XM_039778956.1 mRNA upstream 402665 8491106 ~ 8530029 (-) True LOC120545024
XM_039780070.1 mRNA upstream 470329 8558770 ~ 8575540 (-) True slc30a5
XM_039780771.1 mRNA upstream 488062 8576503 ~ 8586809 (-) False LOC120546028
TU234856 other downstream 928080 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 1267301 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 2687489 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 3190810 4849948 ~ 4897357 (-) False odf2a
TU235162 other upstream 269282 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 537041 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 981721 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 1754371 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 1772560 9861001 ~ 9874345 (-) False grin1a

Expression Profile