RNA id: TU235313


Basic Information

Item Value
RNA id TU235313
length 2171
RNA type TUCP
GC content 0.45
exon number 5
gene id LOC120545754
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 8625482 ~ 8634067 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACAGAGGACGTCAAGTCGTCTGCGAACGTAGCCACCAGTGCTCCCAGGCGGAGTGGAGTCATATTTGTAAAAGACTGAAAAGCACAGACAACGACTCACCTAGACGGCCCTAGTTAGTTAGCTACAAGATCAAATCAGTTAACGTTATTCCGTCAATCCAAAAACAAGTCTCAAGAAAAAACGACGTTTCTCAGACTAAAGGTCAGCTCACCAGGCAGCAGACATCACCATGGCCCAGGAAACTAATCAGAGCCCAGTTCCTATGCTCTGTGCTAATGGCTGTGGTTTCTATGGCAACCCTAGGACTAATGGCATGTGCTCCGTGTGCCACAAGGAGCACCTGTCAAGACAGAACAATGGAGGAGTCGGTTCTATGAGTGTTATGGtggggTTTCAACTACCAGATCTGTAACCCAACAGATGACTGAGATGAGTCTCTGCTGTGAGGAGAAAGGAGCGTCGGGGAGCAACGTGGAGCTCACAGAGCCAGTGTTGACTCAGCCCACGTTCTCAGCCTCTCATCCCTCCGCGGCTGGCAGCAGGGATTCCAAAGCCCCGGAGCCCCCAAAACCCAAGAAGAATCGCTGCTCTATGTGCCGCAAAAAGGTTGGCCTTACAGGTTTCGACTGCCGCTGTGGGAATCTGTTCTGTGGACTTCACCGTTACTCCGATAAGCATAACTGTCCGTACGACTACAAAGCGGAGGCTGCCGACAAGATTCGCAAAGAGAACCCCGTGGTCGTTGCCGACAAGATCCAGAGAATATGAAGAGGACGCCGTTTTACTTTTGAACACTGGGAGCGATCGGCttcaaaagaaaaggaaaaaaaaatggactCAACCCCCAACCTTCTTCCTGAaggacctgtttttttttttttttgtcgtttgttaCACATTCAAGACTTTTTCCCTAGTGCATGAAAAGTTCACCTATGTTTTTCAGCGTTCATTCTTGTTTGTATGAGTTTATCACTTTTGGGAGGGTTGTTTGTGAGGATGGGGGGGCGAGATGCTGTTGTCGGCCATGCAGGCTGTTTTGTGATCCTCTGGAACTCTGCCTGGAAAGAGCTCGGACACCTGGGCCTGTTTGGACTCTCCGACTTTTTACTGCCGATGGCTGATGGCGCCATCTCAGCCGTTGCTTGCTCTCTGCTGGCTTGAGTAGCAAAATGGatattgtcttttatttttatttttttcagtttttggcctCCACCTAACTCTGTGAGGTCAGAGTTTAACCCTCCTTACTTGTCAGACTTTGCGTCCCCGGTAAGTTTCATCAACCTGAAATGCTTCTCTGTGCCGCTGGAATCTCATCTACTCTGCCCACCCCCACGCCGCAACACACAGCTCCGACATATTGCTAAAGAGACTTTAAAAGAAGAGACTTTGTCACGAGCCCTTTTTTCTTGCTGGCTCACATTCGTACcctcctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcggcGCTAGAAACCCAACATAGTTTGACAGTTTACTTGTTTCCTTCTGTTGATCTCGGGCCGAATGCTGTGACCCGCTCTGGATGGCAGGCGTTTCCACTTCCTGCTTTTTTTAGgtccgttaaaaaaaaaaccatccgCTGAAGTCCCAGGATGATTCACGTCGCCTGGcagtttaatgtttgtttttccagAAAAGTGGTGTGTatgctgctgtgttttgttgtatgACAAGTAGCCTAAACTTGTATTAATGTTTGCCTTTAGAAGGGTTTAGCTCCACTAATATTTTCATCTTTTACTTCACTATTGAATGAtttccctcttcttttttttaatttttttttttttaaagaaaatgtgagCTGACAAATTCACAATATTGGGAGTGTTGGACTGttgcatactgtgtgtgtgtgtgtgtttgcaggagTACATGTGAACGGCTGGCGTGTGAGTATCGTATGAGGTGAAGTGGTTGTGTGCTGTGGTGACTTAGACCTGTGGTCGTAGGTTATTaatcattttcagttttttgattTTTGGTCTGGCTGCTTAAtcggagtttttttttttttgtttttttttaccctttagtTATGCAAGTTTGTACAAacctctttttatttatatactgCAGTGCGCGTAATCTTccaataataaagaaaaaaaatgtatgatgTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235227 lncRNA downstream 77470 8538120 ~ 8548012 (-) True G173778
TU235217 lncRNA downstream 141233 8483879 ~ 8484249 (-) True G173768
TU235213 lncRNA downstream 146235 8478356 ~ 8479247 (-) True G173765
TU235209 lncRNA downstream 157102 8455764 ~ 8468380 (-) True G173761
TU235184 lncRNA downstream 186507 8433002 ~ 8438975 (-) True G173744
TU235324 lncRNA upstream 1837 8635736 ~ 8636254 (-) True G173840
TU235336 lncRNA upstream 58486 8692385 ~ 8692745 (-) True G173848
TU235361 lncRNA upstream 242782 8876681 ~ 8877345 (-) True G173865
TU235371 lncRNA upstream 265454 8899353 ~ 8903114 (-) True G173874
TU235394 lncRNA upstream 301248 8935147 ~ 8935592 (-) True G173895
XM_039780772.1 mRNA downstream 8518 8590269 ~ 8616964 (-) True tmc2a
XM_039780771.1 mRNA downstream 38673 8576503 ~ 8586809 (-) False LOC120546028
XM_039780770.1 mRNA downstream 38675 8576503 ~ 8586807 (-) True LOC120546028
XM_039780070.1 mRNA downstream 49942 8558770 ~ 8575540 (-) True slc30a5
XM_039778956.1 mRNA downstream 95453 8491106 ~ 8530029 (-) True LOC120545024
XM_039778936.1 mRNA upstream 30926 8664825 ~ 8665456 (-) True pmchl
XM_039779445.1 mRNA upstream 66060 8699959 ~ 8784342 (-) True LOC120545257
XM_039780107.1 mRNA upstream 161931 8795830 ~ 8812094 (-) True alad
XM_039780355.1 mRNA upstream 218888 8852787 ~ 8856729 (-) True ssna1
XM_039780586.1 mRNA upstream 988526 9622425 ~ 9706925 (-) False stxbp1a
TU235162 other downstream 267455 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 1465395 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 1804616 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 3224804 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 3728125 4849948 ~ 4897357 (-) False odf2a
TU235399 other upstream 436263 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 1208913 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 1227102 9861001 ~ 9874345 (-) False grin1a
TU235744 other upstream 1463477 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 2527341 11161240 ~ 11164355 (-) False LOC120545042

Expression Profile