RNA id: TU235399


Basic Information

Item Value
RNA id TU235399
length 961
RNA type TUCP
GC content 0.51
exon number 2
gene id G173900
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9070162 ~ 9071208 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcacagcggacttttccctccacagacgcacgtcggtaaattagggaatgtatttgcgctcccgggggcggttcagcgaaaagaggaggcgtgttcaggcgcaaacgttacgtagtcctattttgcagatgctattttaggggcgcatgcttggccataatgtagtgtgtgcacaacgcgcatacacttctctcatctacagcaattctcatttttgaaaaccatacataattacaaagaaaaatattactgaaaatgcgcttcaggtgtttggataggtcaggaggcactttacagtacagtcctcaaaaagtcgcagcattctttgtggcttgttgtgttttacacaacatttccatgaatcatggatgtgttgatgacataaatgaggaaatattagaggacttaaggagacgtgatgttgaactacggtgggattggacactccggcggaatctggtccgggagtaatgcgcgatgcgctcctggtggagcgggtggacggagatggagtggggggaggaggaaggggcacaacaggtgcaggtggtgcgtttggaggcccacgctccatggctgcagcaatcctctccagacttgaggagatgcgcccgagaggccgcagcaacatcgccacccggacaagacgggcatttattactttgccgcatcccagacagctcccgctggcgtgcgccaggcaaatccgccgtcataatagcaatccgccacggaacaatacgcctgctcttaaagggaatgtgagatgacgctctgattggttattttcacgttacgcccaaaccacacctagctacttcagaccaacccattttagatttgcgtcgggcgcaagactcatttatcccgccggtataatagcaacagcgcccgagatccgcccacaaagctacttgcgtttggcgtttcacacttgcgtttcagatcgttaaaatagggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235394 lncRNA downstream 134570 8935147 ~ 8935592 (-) True G173895
TU235371 lncRNA downstream 167048 8899353 ~ 8903114 (-) True G173874
TU235361 lncRNA downstream 192817 8876681 ~ 8877345 (-) True G173865
TU235336 lncRNA downstream 377417 8692385 ~ 8692745 (-) True G173848
TU235324 lncRNA downstream 433908 8635736 ~ 8636254 (-) True G173840
TU235405 lncRNA upstream 32744 9103952 ~ 9104183 (-) True G173906
TU235406 lncRNA upstream 42156 9113364 ~ 9113563 (-) True G173907
TU235409 lncRNA upstream 49106 9120314 ~ 9120602 (-) True G173910
TU235410 lncRNA upstream 53674 9124882 ~ 9125179 (-) True G173911
TU235411 lncRNA upstream 56097 9127305 ~ 9130944 (-) True G173912
XM_039780355.1 mRNA downstream 213433 8852787 ~ 8856729 (-) True ssna1
XM_039780107.1 mRNA downstream 258068 8795830 ~ 8812094 (-) True alad
XM_039779445.1 mRNA downstream 285820 8699959 ~ 8784342 (-) True LOC120545257
XM_039778936.1 mRNA downstream 404706 8664825 ~ 8665456 (-) True pmchl
XM_039780312.1 mRNA downstream 436095 8625588 ~ 8634067 (-) True LOC120545754
XM_039780586.1 mRNA upstream 551217 9622425 ~ 9706925 (-) False stxbp1a
XM_039780585.1 mRNA upstream 551217 9622425 ~ 9665839 (-) False stxbp1a
XM_039780584.1 mRNA upstream 551217 9622425 ~ 9665839 (-) True stxbp1a
XM_039780587.1 mRNA upstream 650486 9721694 ~ 9732993 (-) True slc31a2
XM_039780201.1 mRNA upstream 663247 9734455 ~ 9778180 (-) True arrdc1b
TU235313 other downstream 436263 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 712135 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 1910075 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 2249296 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 3669484 5396633 ~ 5400678 (-) True LOC120545230
TU235701 other upstream 771604 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 789793 9861001 ~ 9874345 (-) False grin1a
TU235744 other upstream 1026168 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 2090032 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 3285720 12356928 ~ 12357890 (-) True G174439

Expression Profile