RNA id: TU235411


Basic Information

Item Value
RNA id TU235411
length 3640
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G173912
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9127305 ~ 9130944 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCAATTTCATAATCATACCTCTTTATTCAAGGACTTATATTCATATAAAATCTATAGGTACAGTTGAAATGACTGCAGGACAGACAGTCAAGTAACAGATCAGGCAGCAAAGGATTCAGCCACTCCAGAACCTCTTTTCTGAGAAAGAGCCTTGCTTCCACTTTGGTGGTTCTGTGATAAAATGTTAttcaaagtctttttttgtctttacctGAAACAGGTACGTACATTGTTTGTTTTAGATAATCAGAAAATACAACCAGGAAACAAATTGTACAAATCATGGACTGAATGAAGTTAAAcaatgcctcttttttttttttttttgcacatgcacattttcatttcagaaCATGCAAACAGGACATGTCCAGAGGGGGCAGTCATAGTAAAACTGTAAGAAGAAAACTTGGCACCCTGTTCATGTAGGGCTCGTTGGAGGTCTGAAAATGTTGGATCTTTTGAGAAATCTACTGTCGAGATGAACACACAAATCTCTGCTCCAATATGGCAACTTACAGCAACGTTTCCAAGACAGTAAGACAGCACGCATTCTATTACATTACCTTTACAAAGAACAGAGCCACACCTACACTTAGACCTTATTGCTTTAAAGTCTAAAACGTTCCTTTTTAGGCAAACCAATAAATAGATTGCACAAATATGAGACAGCGTGGGggaaaaaattaaaacacaagGAAATAATCAGACTTGGATCAAATTATATTTGCAAATAATTGACATGTTTATAAACTTGCTTAGAGTCAATACAAAGATCACCAAGAGAGTTAGGCACCTAGAAGTCCGCTATTTTGATCTAATTTGTATTTTGAGTCAAAGTACACAGTGATAAATAATCCTTCTATATATGtgcaacatttgttttattcaaATACGTTACCTAATGACCTAATTTCATTTAAATCTGAACGTTTTTGTCAATCAACTGTATTCATCTATATCATGTGTTTTAAAGATTAAGCCcagtgatattctatatttttcttattttcaacaAATACAAAAGTTCATTTTGAtaaatcccacacacacaccgttctgcatttgctaaaaactaccGGGCTATGTAGCATTCAAACGCTAGGATTGGCCAGGCATCCATACTCGTGCAAGGTACaggaacccgatttgttcaggtcctatcccgaCCAATGGACTATCCAGACCTTAACCACGTGAGGTAAATACCTAACCCTAACTTCAACCAATCAGGCTGCTATGCAGGGTGGGTCTTGCCAAGAAACCAAGTGTGATTGATAATAATGCTTCCAGCTGCcataaatactcactagagcaccaaatgtgtattaatccacagctgaaaatagtccccaacaaatgcactatttatttctgtttaggGAACATTTGCTAAAGCTGTTTTAGGAAACTGCTGAGCCTTTTTTAAGACATAGAACTTAGTATTTGATATAATTATAAGATTTATGTGTTCATTAGGAAACAATGGGCTTGGGGGCTGAGTGTCATTGTCAGAGTAGGTGAATCAGAAAATACCAAAagactaacacattgttggttttggtcttttcatgggattagttgacaataaaaaaaactacagaatATTGCCAGCCTTTTTTCTTTAAGTACATAAGGAAGACAGGTAAAACGTGTAGCCACCGTGTTGCGTTAGCCTGGTGGGCTAACAATCACAAAAGGATTTGAAATACATACATGCAAAATAATGCCTCGGGTCTCAGGATATGCTACTTGTCTTTTAGGCTCGTGTAGAGCTCTACTCATGACACAAAAATGTTAGTTCAGCCTTTTGTTATTGCCAGAATACCTCACActgaaaccactttatcagcCCTGTTTAACTGGTTTTCTAAgcaagtttaaaaaacaaaacaaaaaaaacactaaaattaTTTCAAAACACAACTTGACCCAAGTCTGTTAAGAACACTGTTTTATATTTAGGGTGGTTCCATCTAGGTAGGTGTCATGCAGTCAACTTGCCAGCCCTGTGATTCACATCTATCAGCTTTGATACCATTTGTGCCTCAGTATGTGTTGTCAGTTAACTGTACATTATATAATACATTTCAAATTTACAACTCTTCATACACAAATTTGTAAAATTTGGTCACAGTCACACTAAAGCCTGAACCTGGAGATTCCAGAGGGTAAAGCTACAGGGCAGATGAAGTGTCGTCTTGTTGCATAGCCCTATTTGAAGTCAAcagtcagcagcaacaacacaacTCTTTATTGTACCTGTGAATACACAAACAGGTAACCTCTCCTACAAACCCTCACACAATACTGCTCTCCGAGGACAGGATAAGAAGAAATGAAACCCATGACATCTGGGAAAATATGGCAGAgatgggatatatatatatatatatatatgattgtaaataaaaaaaaaaaatggcacttTTCTCCATTCCGAGACCATTTCTGCCAACTGGCTGGCAGTATATTTGAAAGAGAAAGGCAAATGCTTACCACACACCCTTAAGCAAAAGTATAGACCCTGGCATGCACTACATTGCTTACTTTGGATTTGTAATTCAGACTTACCTACCACAAGATTCAGTACAAAGTTaggtttttttttgcattctgtCCATTATACCAGACTCAAACTTTGTTCTCTACTTTTTTCTCAGCTGTGTACACACCTACATCCTCTACTGTATGTTCAAGTCCATCTGACCAGGCTGCATCTTAATACATCTTGGAAGACGAGGCACTTAGTATTCAGCCACATAACATCAGCAAAGAGTTACCCAGTCTCCTTGTGCActcataaaatgtatttaatctgGTACAATTTACAAAAACGTGATCATGAAAACTGGGCTCTAGTCCTATTCTAAACCCTCccgttgtttcatttttttgtcacattactCACTGTGTCCCTTATCACGGCAGAGGTTTCAGACTTTCATCAAATAGTCCTAATATCGGCTCTGGTCAGAATTTGGTTATAACCCCAAAGTAATAgcttataacaaaaaaaaaaaaaaagataatttggTGGAAGCATCAATACGATCAAGTTGACTCTTCTCTCACCTACATGGCAACTATAGACAAAATgaaacatacaaaaataaaaagagttgtgtgttgtgtgaacaGCCATATTAACACCAGGAATGAAAGTATTCACATCCGTCTGAAACGCACTTCATAGTTTCACTCAAAAAATGAGGAGGTTTTGGTTTTTGTCTTCTGCTCCATCACTGATTTTACTGGCCAAGGCAAAATACTTAAGGGTCTTCACAGGTGCTATAATTTCAGTGCAAGTAAAGGGGGTAGAAAAGTCATCAGTGTCATTTTCCCTTAAAAGTTTGTTGTATAAAAAAAGGAGAGCAACACTACAAAGCTGGAATGATTTCTGATCCCCTTTCACAGCACTTACCGCTGGCTTTTTCCTTCCACTACCTTTCTTTCTGTCCTAATCCGCTGGGCTCCTATCAGCTCATTGGACGTGAGCGCTGTAAAACACTGATAAGCTGTCCGTCCTCAGCTAACACTTTCCTGCCATATTAGCACCAGTCTTCTTCGTCCCTCTCCCTGAGACTTCCTGTTCCTCGGCTCCCAGGCCCAGACGCAGAGTTGACTCCGAGGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235410 lncRNA downstream 2126 9124882 ~ 9125179 (-) True G173911
TU235409 lncRNA downstream 6703 9120314 ~ 9120602 (-) True G173910
TU235406 lncRNA downstream 13742 9113364 ~ 9113563 (-) True G173907
TU235405 lncRNA downstream 23122 9103952 ~ 9104183 (-) True G173906
TU235394 lncRNA downstream 191713 8935147 ~ 8935592 (-) True G173895
TU235433 lncRNA upstream 144230 9275174 ~ 9276352 (-) True G173924
TU235461 lncRNA upstream 145906 9276850 ~ 9277283 (-) True G173938
TU235463 lncRNA upstream 152173 9283117 ~ 9283390 (-) True G173940
TU235464 lncRNA upstream 152879 9283823 ~ 9284028 (-) True G173941
TU235465 lncRNA upstream 154132 9285076 ~ 9285333 (-) True G173942
XM_039780355.1 mRNA downstream 270576 8852787 ~ 8856729 (-) True ssna1
XM_039780107.1 mRNA downstream 315211 8795830 ~ 8812094 (-) True alad
XM_039779445.1 mRNA downstream 342963 8699959 ~ 8784342 (-) True LOC120545257
XM_039778936.1 mRNA downstream 461849 8664825 ~ 8665456 (-) True pmchl
XM_039780313.1 mRNA downstream 493270 8625588 ~ 8634035 (-) False LOC120545754
XM_039780586.1 mRNA upstream 491481 9622425 ~ 9706925 (-) False stxbp1a
XM_039780585.1 mRNA upstream 491481 9622425 ~ 9665839 (-) False stxbp1a
XM_039780584.1 mRNA upstream 491481 9622425 ~ 9665839 (-) True stxbp1a
XM_039780587.1 mRNA upstream 590750 9721694 ~ 9732993 (-) True slc31a2
XM_039780201.1 mRNA upstream 603511 9734455 ~ 9778180 (-) True arrdc1b
TU235399 other downstream 56097 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 493406 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 769278 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 1967218 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 2306439 6820812 ~ 6820866 (-) True LOC120546140
TU235701 other upstream 711868 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 730057 9861001 ~ 9874345 (-) False grin1a
TU235744 other upstream 966432 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 2030296 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 3225984 12356928 ~ 12357890 (-) True G174439

Expression Profile