RNA id: TU235463



Basic Information


Item Value
RNA id TU235463
length 274
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G173940
representative True

Chromosome Information


Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9283117 ~ 9283390 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTCCACTGCTCTGTCATGCTGGGATAGGAGAGCAGTCCAAATATGAGCAGCAGAGCCAGCAGGAACAGGATGAGGCTTCGCTGGAGCCGAGACAGCTGCTTCCATTTCTGTAGGCAGATATAAAACAAAGCTAACTACACTGAAACATGACCAACAGCTCTGGATTCAAATCACAAGCGTCTGTCAGCAGATTCCAACACCTCCAACCCCCTCTCACAATATCTTACAAATCTGTTTATGCTTTTGAAAGTAGAGTGGCTAAGGGAAAAGCGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU235461 lncRNA downstream 5834 9276850 ~ 9277283 (-) True G173938
TU235433 lncRNA downstream 6765 9275174 ~ 9276352 (-) True G173924
TU235411 lncRNA downstream 152173 9127305 ~ 9130944 (-) True G173912
TU235410 lncRNA downstream 157938 9124882 ~ 9125179 (-) True G173911
TU235409 lncRNA downstream 162515 9120314 ~ 9120602 (-) True G173910
TU235464 lncRNA upstream 433 9283823 ~ 9284028 (-) True G173941
TU235465 lncRNA upstream 1686 9285076 ~ 9285333 (-) True G173942
TU235466 lncRNA upstream 13003 9296393 ~ 9297614 (-) True G173943
TU235467 lncRNA upstream 14335 9297725 ~ 9298478 (-) True G173944
XR_005636702.1 lncRNA upstream 54377 9337767 ~ 9338418 (-) True LOC120545476
XM_039780355.1 mRNA downstream 426388 8852787 ~ 8856729 (-) True ssna1
XM_039780107.1 mRNA downstream 471023 8795830 ~ 8812094 (-) True alad
XM_039779445.1 mRNA downstream 498775 8699959 ~ 8784342 (-) True LOC120545257
XM_039778936.1 mRNA downstream 617661 8664825 ~ 8665456 (-) True pmchl
XM_039780313.1 mRNA downstream 649082 8625588 ~ 8634035 (-) False LOC120545754
XM_039780586.1 mRNA upstream 339035 9622425 ~ 9706925 (-) False stxbp1a
XM_039780585.1 mRNA upstream 339035 9622425 ~ 9665839 (-) False stxbp1a
XM_039780584.1 mRNA upstream 339035 9622425 ~ 9665839 (-) True stxbp1a
XM_039780587.1 mRNA upstream 438304 9721694 ~ 9732993 (-) True slc31a2
XM_039780201.1 mRNA upstream 451065 9734455 ~ 9778180 (-) True arrdc1b
TU235399 other downstream 211909 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 649218 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 925090 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 2123030 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 2462251 6820812 ~ 6820866 (-) True LOC120546140
TU235701 other upstream 559422 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 577611 9861001 ~ 9874345 (-) False grin1a
TU235744 other upstream 813986 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1877850 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 3073538 12356928 ~ 12357890 (-) True G174439

Expression Profile