RNA id: XM_039780417.1


Basic Information

Item Value
RNA id XM_039780417.1
length 3234
RNA type mRNA
GC content 0.54
exon number 21
gene id grin1a
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9861001 ~ 9903007 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCGCAGTACCACCGCGGCGCGCATGCACAGCTGTCATCAGCACCAAGGACAGCAGCCGCTCAGCCCGGAGCGAGCAGCCGCATCGGGGTGATCAGTTCGCACGGAGCAGCGGCAGAAAGGAGCGATACACAGCCCGGAGAGGAAGCCGTCTGTCTGGAGGCTTGGACAATGGTTTAACTctttctacaaaaaaaaaaacaacccttaGGAGGTTTGAGCAGTTCTTCagaggagacaaaaaaaagggGATGGACAATGCGGTTTGGATGTCCCTGGTTGACAGCCTGCTCCTAATATGAGCATGCACATTCCTCCGCATTGCACATAAATccacctcctttttttttttttttgtcgtctCCTTCCTTTTTTGGCCTCCCTCCCTGCCCGGCTCACACCGCCCACCTGGATCGTGTCTGCAGTAACTGGCTACGCCGTGCTGCCGTCCAGAAGCCGTTCGAGCCGACCCGCCACCGGGGAGAAAAGCGACcgggctgtgctgtgctgtttgGTGGTCCACACGATGCGTCTGTTTCTGCTGGCGGTGCTCTTCTCGTGCTCCTGCGCGCGGGCCGGCTGCGAGCCGAAGATCGTGAACATCGGGGCTGTGCTGAGCCAGAAGAGATACGAGCAGGTCTTTAAAGATGCCGTGACCCAGGCCAACCAGGTCTACGGCAGGGACAAATTCAAGCTGACCGCTATCTCCGTGACGCACAAACCCAACGCCATCCAGATGGCTCTCTCCGTCTGCGAGGACCTCATCTCCAGTCAGGTCTATGCTATCCTGGTGAGTCACCCTCCCCAGTCCAATGACCACCTGACTCCGACGCCTGTCTCATACACTGCAGGCTTTTACCGCATCCCCGTTGTGGGCCTCACCACCCGCATGTCCATCTACTCAGACAAGAGTATCCACCTGTCCTTTCTGCGGACAGTCCCTCCCTACTCCCACCAGGCGCATGTGTGGTTCGACCTGATGCGGGAGTTCAACTGGAACCACATCATCTTGATAGTGAGTGACGACCACGAGGGGCGGGCCGCTCAAAAGAGGCTCGAGACCCTCttggaggagagagaaacaaagaataaaaaaaggaaCTATGAAAACCTCGACCAACTGTCCTATGACAACAAGCGAGGACCTAAGGCAGAGAAAGTCCTCCAGTTCAGCCAGGAGACTAACTTAACTGCCCTGCTGCTGGAGGCCAAAGAGCTGGAGGCCCGAGTCATCATCCTGTCCGCCAGTGAGGAAGACGCTGCTGCAGTGTACAAGGCTGCCCGCTTCCTCAACATGACGAGCTCGGGGTACGTGTGGCTGGTGGGCGAGCGGGAGATGTCGGGTAAAGCCCTGAACGAGGCGCCAGACGGTCTGATCAGCCTCCAGCTTATCAACGGGAAGAATGAGTCAGCCCATATCAATGATGCGGTGGCTGTGGTGGCGCAGTCCATCCAGGAGCTCTTTGAGAAGGAGAATATCACAGAACCTCCGAGAGGATGTGTGGGCAACACCAACATCTGGAAAACAGGGCCACTCTTTAAACGGGTGCTGATGTCATCCAAATACCCAGAGGGCCTCACAGGACGCGTGGAGTTCAATGACGACGGAGACAGGAAGTACGCCCATTACAGTATACTCAACTACCAGAAGGGTCGACTCATTCAAGTCGGCATATACAATGGGACACAGGTGGTGATGAACAATCAGCGGAAGATCATCTGGCCCGGAGGAGAGACTGAGAAACCACAGGGCTTCCAGATGTCCACTCGATTAAAGATAGTGACGATACACCAGGAGCCATTTGTATATGTGAAACCCACTCAACCGGATGGAACATGCAAGGAGGAAATCACATTAAATGGAGTCTTAATTAAAAAGGTTATCTGCACTGGGCCCAATGAGACCATCCCAGGTAACCTATCAGGACGCCCAATTGTGCCCCAATGTTGTTATGGATTCTGTATCGATCTCCTCATCAAGTTGGCCATGACCATGAACTTCACCTACGAGGTGCATCTGGTGGCTGATGGAAAATTTGGAACTCAGGAGCGGGTAAACAACAGTAACAAGAAAGAGTGGAATGGCATGATGGGAGAGCTCCTGGGGGGCCTGGCTGACATGATTGTAGCCCCGCTGACTATAAACAACGAACGAGCGCAGTACATCGAATTCTCCAAACCCTTTAAATATCAAGGTCTCACCATCCTCGTTAAAAAGGAAATCCCTCGCAGTACATTGGACTCGTTCATGCAGCCGTTCCAAAGCACGCTGTGGCTGCTGGTGGGTCTTTCGGTGCATGTGGTGGCGGTGATGCTTTACCTACTAGACCGGTTCAGCCCGTTTGGAAGATTTAAAGTAaacagtgaagaagaagaagaagatgccCTCACCTTATCATCTGCTATGTGGTTCTCCTGGGGAGTGTTGCTGAATTCTGGAATCGGTGAAGGTGCCCCGCGCAGCTTCTCAGCGAGAATCCTGGGTATGGTGTGGGCCGGATTTGCCATGATCATTGTGGCTTCTTATACTGCCAACCTGGCTGCCTTCCTGGTGTTGGACCGGCCTGAGGAGCGCATCACCGGCATCAATGACCCAAGACTGAGAAACCCATCGGACAAGTTCATCTACGCCACGGTGAAGCAGAGCTCCGTGGACATCTACTTCCGGCGGCAGGTGGAGCTTAGCACCATGTACCGCCACATGGAGAAGCACAACTATGAGAGTGCCGCCGAGGCTATCCAGGCCGTGCGTGACAACAAGCTGCATGCTTTCATCTGGGACTCTGCGGTGCTGGAGTTTGAAGCCTCGCAGAAGTGCGACCTTGTGACCACGGGAGAGCTGTTTTTCCGTTCGGGCTTTGGCATAGGCATGCGCAAGGACAGCCCCTGGAAACAGAATGTGTCCCTGGCCATTCTCAGTTCTCATGAGAACGGCTTCATGGAAGACCTAGATAAAACCTGGGTGAGATACCAGGAGTGTGACTCAAGGAGCAATGCCCCAGCCACACTCACCTTTGAAAACATGGCAGGAGTCTTCATGTTGGTGGCAGGAGGAATAGCGGCAGGGATCTTCCTAATCTTCATTGAAATCGCATATAAGCGCCATAAAGACGCCCGCAGGAAGCAGATGCAGCTGGCCTTTGCGGCCGTCAATGTTTGGAGGAAGAACCTGCAGCCCTCTTCCTCTCTAGAGACTCAGGATGACCCTCCCTCTatttaaacaatataaaataag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235693 lncRNA downstream 69715 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 69715 9795843 ~ 9796971 (-) False G174116
XR_005636702.1 lncRNA downstream 528268 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 568208 9297725 ~ 9298478 (-) True G173944
TU235466 lncRNA downstream 569072 9296393 ~ 9297614 (-) True G173943
TU235726 lncRNA upstream 142163 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 185813 10088282 ~ 10088523 (-) True G174143
TU235759 lncRNA upstream 292607 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA upstream 334276 10236745 ~ 10239274 (-) True G174168
TU235760 lncRNA upstream 341258 10243727 ~ 10284037 (-) False G174166
XM_039780420.1 mRNA downstream 8842 9835813 ~ 9857844 (-) True LOC120545811
XM_039780421.1 mRNA downstream 31909 9831300 ~ 9834777 (-) True phpt1
XM_039780406.1 mRNA downstream 35476 9799084 ~ 9831210 (-) False mamdc4
XM_039780837.1 mRNA upstream 20737 9923206 ~ 9938950 (-) True zgc:92275
XM_039778917.1 mRNA upstream 40244 9942713 ~ 9948797 (-) True LOC120544996
XM_039778918.1 mRNA upstream 47691 9950160 ~ 9954737 (-) True LOC120544997
XM_039778925.1 mRNA upstream 56238 9958707 ~ 9963616 (-) True LOC120545003
XM_039778921.1 mRNA upstream 63619 9966088 ~ 9971850 (-) True LOC120544999
TU235701 other downstream 23187 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 795478 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1232787 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1508659 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 2706599 7152870 ~ 7160087 (-) True G173470
TU235744 other upstream 194907 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1258771 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2454459 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2488086 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4577993 14480462 ~ 14483417 (-) True G174799

Expression Profile