RNA id: XM_039780419.1


Basic Information

Item Value
RNA id XM_039780419.1
length 5445
RNA type mRNA
GC content 0.49
exon number 23
gene id grin1a
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9861001 ~ 9903007 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCGCGCAGTACCACCGCGGCGCGCATGCACAGCTGTCATCAGCACCAAGGACAGCAGCCGCTCAGCCCGGAGCGAGCAGCCGCATCGGGGTGATCAGTTCGCACGGAGCAGCGGCAGAAAGGAGCGATACACAGCCCGGAGAGGAAGCCGTCTGTCTGGAGGCTTGGACAATGGTTTAACTctttctacaaaaaaaaaaacaacccttaGGAGGTTTGAGCAGTTCTTCagaggagacaaaaaaaagggGATGGACAATGCGGTTTGGATGTCCCTGGTTGACAGCCTGCTCCTAATATGAGCATGCACATTCCTCCGCATTGCACATAAATccacctcctttttttttttttttgtcgtctCCTTCCTTTTTTGGCCTCCCTCCCTGCCCGGCTCACACCGCCCACCTGGATCGTGTCTGCAGTAACTGGCTACGCCGTGCTGCCGTCCAGAAGCCGTTCGAGCCGACCCGCCACCGGGGAGAAAAGCGACcgggctgtgctgtgctgtttgGTGGTCCACACGATGCGTCTGTTTCTGCTGGCGGTGCTCTTCTCGTGCTCCTGCGCGCGGGCCGGCTGCGAGCCGAAGATCGTGAACATCGGGGCTGTGCTGAGCCAGAAGAGATACGAGCAGGTCTTTAAAGATGCCGTGACCCAGGCCAACCAGGTCTACGGCAGGGACAAATTCAAGCTGACCGCTATCTCCGTGACGCACAAACCCAACGCCATCCAGATGGCTCTCTCCGTCTGCGAGGACCTCATCTCCAGTCAGGTCTATGCTATCCTGGTGAGTCACCCTCCCCAGTCCAATGACCACCTGACTCCGACGCCTGTCTCATACACTGCAGGCTTTTACCGCATCCCCGTTGTGGGCCTCACCACCCGCATGTCCATCTACTCAGACAAGAGTATCCACCTGTCCTTTCTGCGGACAGTCCCTCCCTACTCCCACCAGGCGCATGTGTGGTTCGACCTGATGCGGGAGTTCAACTGGAACCACATCATCTTGATAGTGAGTGACGACCACGAGGGGCGGGCCGCTCAAAAGAGGCTCGAGACCCTCttggaggagagagaaacaaagaataaaaaaaggaaCTATGAAAACCTCGACCAACTGTCCTATGACAACAAGCGAGGACCTAAGGCAGAGAAAGTCCTCCAGTTCAGCCAGGAGACTAACTTAACTGCCCTGCTGCTGGAGGCCAAAGAGCTGGAGGCCCGAGTCATCATCCTGTCCGCCAGTGAGGAAGACGCTGCTGCAGTGTACAAGGCTGCCCGCTTCCTCAACATGACGAGCTCGGGGTACGTGTGGCTGGTGGGCGAGCGGGAGATGTCGGGTAAAGCCCTGAACGAGGCGCCAGACGGTCTGATCAGCCTCCAGCTTATCAACGGGAAGAATGAGTCAGCCCATATCAATGATGCGGTGGCTGTGGTGGCGCAGTCCATCCAGGAGCTCTTTGAGAAGGAGAATATCACAGAACCTCCGAGAGGATGTGTGGGCAACACCAACATCTGGAAAACAGGGCCACTCTTTAAACGGGTGCTGATGTCATCCAAATACCCAGAGGGCCTCACAGGACGCGTGGAGTTCAATGACGACGGAGACAGGAAGTACGCCCATTACAGTATACTCAACTACCAGAAGGGTCGACTCATTCAAGTCGGCATATACAATGGGACACAGGTGGTGATGAACAATCAGCGGAAGATCATCTGGCCCGGAGGAGAGACTGAGAAACCACAGGGCTTCCAGATGTCCACTCGATTAAAGATAGTGACGATACACCAGGAGCCATTTGTATATGTGAAACCCACTCAACCGGATGGAACATGCAAGGAGGAAATCACATTAAATGGAGTCTTAATTAAAAAGGTTATCTGCACTGGGCCCAATGAGACCATCCCAGGACGCCCAATTGTGCCCCAATGTTGTTATGGATTCTGTATCGATCTCCTCATCAAGTTGGCCATGACCATGAACTTCACCTACGAGGTGCATCTGGTGGCTGATGGAAAATTTGGAACTCAGGAGCGGGTAAACAACAGTAACAAGAAAGAGTGGAATGGCATGATGGGAGAGCTCCTGGGGGGCCTGGCTGACATGATTGTAGCCCCGCTGACTATAAACAACGAACGAGCGCAGTACATCGAATTCTCCAAACCCTTTAAATATCAAGGTCTCACCATCCTCGTTAAAAAGGAAATCCCTCGCAGTACATTGGACTCGTTCATGCAGCCGTTCCAAAGCACGCTGTGGCTGCTGGTGGGTCTTTCGGTGCATGTGGTGGCGGTGATGCTTTACCTACTAGACCGGTTCAGCCCGTTTGGAAGATTTAAAGTAaacagtgaagaagaagaagaagatgccCTCACCTTATCATCTGCTATGTGGTTCTCCTGGGGAGTGTTGCTGAATTCTGGAATCGGTGAAGGTGCCCCGCGCAGCTTCTCAGCGAGAATCCTGGGTATGGTGTGGGCCGGATTTGCCATGATCATTGTGGCTTCTTATACTGCCAACCTGGCTGCCTTCCTGGTGTTGGACCGGCCTGAGGAGCGCATCACCGGCATCAATGACCCAAGACTGAGAAACCCATCGGACAAGTTCATCTACGCCACGGTGAAGCAGAGCTCCGTGGACATCTACTTCCGGCGGCAGGTGGAGCTTAGCACCATGTACCGCCACATGGAGAAGCACAACTATGAGAGTGCCGCCGAGGCTATCCAGGCCGTGCGTGACAACAAGCTGCATGCTTTCATCTGGGACTCTGCGGTGCTGGAGTTTGAAGCCTCGCAGAAGTGCGACCTTGTGACCACGGGAGAGCTGTTTTTCCGTTCGGGCTTTGGCATAGGCATGCGCAAGGACAGCCCCTGGAAACAGAATGTGTCCCTGGCCATTCTCAGTTCTCATGAGAACGGCTTCATGGAAGACCTAGATAAAACCTGGGTGAGATACCAGGAGTGTGACTCAAGGAGCAATGCCCCAGCCACACTCACCTTTGAAAACATGGCAGGAGTCTTCATGTTGGTGGCAGGAGGAATAGCGGCAGGGATCTTCCTAATCTTCATTGAAATCGCATATAAGCGCCATAAAGACGCCCGCAGGAAGCAGATGCAGCTGGCCTTTGCGGCCGTCAATGTTTGGAGGAAGAACCTGCAGGACAGTAAGGAGGCCTCTGGAAGTCAAGCGGTGGCCGGGACCCCCTCATTACCCTCTTCCTCTCTAGAGACTCAGGATGATAGGAAAAGTGGTAGAGCAGAGCCCGACCCCCAAAAGAAAGCCTCTTTTAGGTCCATCAGTACCACCCTGGCCTCCAGCATCAAGAGACGTAGGTCCTCCAAAGACACGCAGTACCCACCCACTGACATCACGGGCCAGCTCAATTTGTCTGACCCGTCTGTCAGTACTGTGGTGTAAAGAGGGAGACACCGTTCACTCcccgaggagagaggaaacgagacgaggaaaagaggagaggaggaggaagtggaggggagagggagagggagggagaaccCGTCTCCTCGTTCCCTCCACCGCCGAAGCCGAAGCGTTCATTTCACCGCCCGCAGATGGAGCTTTTGAGGAAACTGTGTCTGAAAACACTGGActtgcaccttttttttttttaaagccaggaTTACCTGGCGTTAGATGTTTGTAGGGTCCCTGAGCATGCACAGAAGAACCCATCTGACTCACATATACAATTTTTTCCTTctgtatattattagcaaaCTTATTTAACCTTGTTTCTGTCCTTGACTCACAGAAATTTACTTAATGTTCGATGTTAACTACTTTCAACTGACCAGCTGTATACGTCTAGCGAGCCAGCTTTAGTTTAGTTAAGTTAATGGATAAACCAGTTTTAGTACTGTACTCAACATATCACATCCAATTAGGGCTTAGATACCTTAGTATTACATTAAGTTTTTCATGTACTGCAATACGAGACGTACTGTACAGTCAGCTTCAATGGATAtcaagtatttttttaaaggggacCTGTGTTTTTATCTACACTTTAAAGGTTTTTAGaagttagtttagttttttctttgatTGAGACCCACTAATATTGGCACTAATGACGAGGATAGGACTAACCTTGTCTACCAGTGAAGACGATGGAAGCACGTGTGTGCTTGTATATGAATAGGAGCTATATGCATCTAAATGATGACATTGATAACTGTTATTTGGAAGGCTACTGTATATACCAGATTCTGTAGTTAAATTGTATCTTTTCCCCTTTAATTTTCTACTAATCTGCCaaatgcatgttttgtttttctagcAGTTTCTTAAAGAAAATCTGTTAAGCTTTACTACTTATGTACAGCAAGAGTTAAGCAGGTGAATGTGTGAAATCACAGATTGATCTGCAATCTGATGAAACGGTTAAGTAAGGCTGGTGTTTGAGACGCTCATCTGGGAGCCATGTTGCTTTTGGGgacgccctctctcctccttcctcctgccGCAGGAGTGCTTTCTCATTCTCCAAGGGGTTGCATCAAAGGGCCAGGTTTTTCACCAAACCGTCACTCAGGCTTTCATGCAAAACTTCCTCCCCGCGTTAACGCTGGAGAGCTTTTACATGAACAAACCCGAGTGAATTTAAAGCGCGGCTTGGTTAGGTGCAACGACAGGCCGTTTCCCATTATCTGGAGCTGAGAAACCACTgctgtttgttgaaaaaaaaaaagactaccaCCTCGTGTCTGGTCTCTGGCACTGCATAGCACTTTATGCTGAGGCGTCTCCAAAACCATCAAATAAAGCTAGTGATTTACCAAGAAACTAGAACAGAATCGCTATAACATCAGTCTGACGTACTAACTTCTCCACTTTCACGTTTTAATTTCACACAtctctttttcattttattttcttacaaAAAAACAGTATCTGCAAAGTCTttgtgagataaaggacacttTGACACAACCACACAGAGTGCAAAAAACAAATTTGGTTTCTTAACTGGAACCGAGAGTTTGTTTCTGATCATGTTCTCATTCTGGCCTATGCATGCTTTCGTGTTGCTATCAGtgctttagtttgttttttggaTGCGTGTTGTTGCTGTGTACAGTCATCTGAGCTGTGTGGAGCCCTTAAGATGGATGAACTGTAAATAGAGTCTGGTTAAGTGTTGATAGGGTTGAAGAGATTGTACTGCTTGCATCACGACTGCCGCTGAGAATGTCTAGTtgcgcaacacacacacacacacacacacacacacacacacacacacacacacacaaacaacagttGTGACATAGGCatgcatcaacacacacacacacacacacacacacacaaaagaaaggaATCACTTGTTTTTCTTACCTTTTAAAGATCTTGCATTGAATCAACTGGTTTATAcaactgtaaataaaatatacttGCATTGCCAAGTTTAACCAA

Function

GO: NA

KEGG:

id description
K05208 GRIN1; glutamate receptor ionotropic, NMDA 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235693 lncRNA downstream 64031 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 64031 9795843 ~ 9796971 (-) False G174116
XR_005636702.1 lncRNA downstream 522584 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 562524 9297725 ~ 9298478 (-) True G173944
TU235466 lncRNA downstream 563388 9296393 ~ 9297614 (-) True G173943
TU235726 lncRNA upstream 142160 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 185810 10088282 ~ 10088523 (-) True G174143
TU235759 lncRNA upstream 292604 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA upstream 334273 10236745 ~ 10239274 (-) True G174168
TU235760 lncRNA upstream 341255 10243727 ~ 10284037 (-) False G174166
XM_039780420.1 mRNA downstream 3158 9835813 ~ 9857844 (-) True LOC120545811
XM_039780421.1 mRNA downstream 26225 9831300 ~ 9834777 (-) True phpt1
XM_039780404.1 mRNA downstream 29774 9799084 ~ 9831228 (-) False mamdc4
XM_039780837.1 mRNA upstream 20734 9923206 ~ 9938950 (-) True zgc:92275
XM_039778917.1 mRNA upstream 40241 9942713 ~ 9948797 (-) True LOC120544996
XM_039778918.1 mRNA upstream 47688 9950160 ~ 9954737 (-) True LOC120544997
XM_039778925.1 mRNA upstream 56235 9958707 ~ 9963616 (-) True LOC120545003
XM_039778921.1 mRNA upstream 63616 9966088 ~ 9971850 (-) True LOC120544999
TU235701 other downstream 17503 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 789794 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1227103 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1502975 8357723 ~ 8358027 (-) True G173727
TU234856 other downstream 2700915 7152870 ~ 7160087 (-) True G173470
TU235744 other upstream 194904 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1258768 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2454456 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2488083 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4577990 14480462 ~ 14483417 (-) True G174799

Expression Profile