RNA id: TU235759


Basic Information

Item Value
RNA id TU235759
length 4321
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G174166
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 10195076 ~ 10284037 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTTCATTCAGGTCATCTttaatgacaaaatgttttaTCAATTCTTCCAAGGTAatggggaaaaagaaaatcaaagcaAATGCATTATTACAATAACTACTGTTAGACCATCACAGCCTGAGGGAAGTCTCTTTCCACACTTCACACTCCTATATTCACATCAGGTCCTGCCATCAACAATAGAGGTTCTATTTTCACACTTTAAAACTTGACTTCCGCTCTGTGCGTTCACAATCTTTTTGCAACATcacggggaaaaaaaacaacaacttaaaaACAGACTACTTGAAACAAACCAAACAGGAAAGAACAATCCAAAATGCCGCTGTCAAACACTGCATGTACAAACACAGGCACCTCTGTGGCTGAAACAGAGACAAAACCCCAGTCATTGTTGGTAGTTAATGAGTCGTACGAGGGAAAACAAAAAGGTAACGCGTCCTGAGTCGACCTGCTGGGTCAAATAGCATTTgcagcttttatttatttaaaaataaaataaaaaggaggcCAATTCTACTTTAActtcaagtagatttttcagatattttcaCATCTATGCCTTCAAGTGGGGTCGACGAAAGCTAAACTAAAATCTTCCTCACAGTTGTGACATACATTGATTTTAAAGACTGTCAGAGCTCATAGAAGTTACTTCTTTAAGTTAAGTTTTTCTCTCCGGGAAATGTAACACTGAAATGGAAGTTAtcagaaaataattttttgaaaAGGCAACAAAGTAACGTCAGGCGGTGTAATGCTCACCTTTAAAACTGAAACTCAATGTGTCATCCTATAAGTAAAAACCTGTACATTTGTCAAAGTAGTTAGcaacaagaaaaataaaaaagcagaaaaaaaccctCACTTCTAAATCAAATATTACTTGACCCAGGACTGGCTGTGGAAGGTCCACTTGGGACAAAACTGACCACAGTCGATGTCTGATATCAAGCTTTTTAATCATGCTGTGGACCTTACTGAACATGCTAGCCAAGTACCTGGTGTTTACACCTAAAGTAGTAAACCTCCCTGCAGTCGATTAGAAGTCGCTGCACATCTGCAAAGGTCAAACTGAGGACCACGTTTGGCCTGTCAAAACCCTGGAATCAGTTCCCTTCATCTGCAGCTTGATGAAGTATTTCTGTGGAAATTTTGGCAAATGTGTTGGAGTGTTAAGGGAGCAGGGCTGGCTATCACtggacattttttaacaaagaTAGTGGCGTTAAAAACAATTCTCCTGATCCAACCAATATCTTTAAAGTCAAAGTCAATGATTTCAAGCTTAATATTTAACTCATCTTTCagaaaatagtttaaaaaattaaaaaaaaaaaaaatgtatataagcagcattttcctaaaaaaaaaacaatttatggtctaatacacaaataatccctctcaatcattACTTATGACCCACTAGAAGTGTGTGGCGATGTCTGTATCTGCCCTCTCTTGTTATTTTGCTGCATGTGGGATGTTTCTGGGCATCAACCATAGTCTTTGGGCCCCACGTAAGTGTGTAACGCCCAGCCAATAACAGCACGCAGAGTGTGCAGCCCGGTCACCTCGCTGTCGCTGTGCTGTtcgacagacacagacacacatgcagcgACAGGATGAATCTCTGCATTCACACAAACCTTCCCGCTGAGGTGTGCggaggtgcaggtgtgtttagttGCGCTTTAGAATGTAATTGCCGTGAAACAAACAATCAGAAAACAACGAGTTATTCCCCCGATTCACGACTTTGTTCTCGCTGGTGCCACTCCCTTTCTCCATTCACTCTCTAGCTTGCTCGTCCGCcgctgctttctctctctcccctagaGGAGGGGAACGCTGTGTCTCTACAAACCGACCAACCGACAAATCCTGCTTAGTATACCTtaacttttaaataaatctACTCAAACATCCTTGAAACAAATGTCAATAAAGCAAGTTCTCTTTATTTCAAATCTCACGTTTTTAAGCTTTTTGGTCGGAAGCCTTCTGGATATGACCACAGTGGCGTGTCATAGCCAGCCCAATCTGGAGTAAAAGTAAGTGGGACCTGAGCCGTAAGGATCAAACCAGCTCTACAATATGTTGCAGACATACCAGGAAGCTCACTGGAAGAACAACGTGGACGCTGAACATTTCTGGACCGTACAGTGGCGTTACACTAGCCTGGCTCCACCCTCCTACGTAATGCCGCTCAATTTTAATTTTCCTttagtactccgtctgggtttgcggtatattcgcgggttttctccggccaatctttaccggtccaatcagcgaacagagggagtggctgagaacgatggcATTGAGactgtgcgctagtttgagttgtagttccgtaatggcggcggagaaagatgcgagcgaagccattcggccCGTTGTGGCAACATTgcagaatatccagaagttaaagcccgagcaagaacaatcattgctgagttgtgttggtggccatgatgttgtggccctcctccccacggggttcgggaaaagttagattttcctgctcgctccgttagtggtgaaggagttggctaaggcaaACGCTaccgatgctaagccgacgtcacgaccaaacgttagcgattggttatggcagatccagagtggctctgggcagatccaatagttttaaacttcaacagagtacccgccttcaaggaagttaacacttgtcaatggagagtggccagactctctggacaaagGAAATgtcccagagtctggtaggaccaggctagcgtTACCCAAGGCCCAACCACAAAATACTGTTAGTGTACACGCTGAGAAGGACgcactgcctgcctgcctccacAGCACACATCTACACTCTGGTTTCCAGTTATTGTCACTTTGCAAAATATTCATTTGGATGCAGAATTGAATAGATTTTCATATCTATAGTTTCCATCACAGAAAAGTCACATAAATCTCTCTTTATAAGCCAGAGACTTCCCCAGTGCAAATCACGAGCGTTTGTGGTTTAGGATGGCCACTATGGTAACCCCTGTCATCGTTACACCTTCTCAATAAACCACTGTTGTAaaataacaatacaaaaaactatattaaaagaaaattaacaaAATGGCTACTTTCAAAAAGGCATGATTACAATTCCAGTTTGCGAAGCTAACTCTGAATTTGGTTGAATCCTTTTAGAGATCTGAGTGTTGGGCTACTCATGTAGGTGGCACAATCTGTGGTCATTTCTAAAACTGGACAGTCCTCCCTTGTTGTCAGATGATCAAGGGGTAGTGTGTAGTAGAAGAGTTTGGTTTGATGCTGCAACCCTCCCTGAAAACCCACCCGTTATAAACATTAAACCCAAATCGCTGGGGAAAAGGAAATATGGGACCTTATTCATTTTTTGAAAAGCTTACATAAATGAGTGAAGGATATAAggcaggaggagggggggagggggggggtatCTACAGAGAGTCAGAGAACAGCCAGTCAAGAAATAAAGGGTGGGGAAGGATGCATTTCTCCTGAGAACATGTCATATCTCAGGGACGAGGAGGGGAAGTGGGGGGCAGGCGGGACAGAGGGAGAAGACACGGGCGTTTTTTCTTCTCACGACAGCAAAACTTTCTTCGACAATTCGTGGCCACTTCTCAGGCACTTTTTCTTCCGTTTCAGGCTCAGAAGGAGCTGGCGGGTGGCGTGGTCAGCCTCTTCCCGATTAGCCTGAAAACTGACCCACGAAGATGTCAACTGTGTGATTACAGTTGATATCCAAATAGCTTATCAATTCAGCCAGATGCCAGGGGCCAGATGATGGCAGCAATGCACACTTTGCCATTTGAGTTTTGGGCAAACTGGCTCTAAGCAAGGTGGCACTGTAATCCTGCATTCTGTTTTCCCTCAGTCTGTGTTTTTGGAGTCTCGTATTATTgcctacatttatttttactgaCTACATAATGTGTTTTCTGCATAATGCTTTAGAGTGCATTATTTCAGGGTTCCAGCCTTTTAGTTTCTCTCAAAAACAGCACATTTACAATCTAATATCTGCCTTTCTAACAATCATAGAAGTGTATAACAGTGAAGGAATGTCAGCACATTGACCTAATGACTCAGAACTGTAGAAGGATTGGCATCATGCCATGTAAGAGACTAGGTTTTAGCAAGACGGATCATTTTTTTAGTGTGATTGCAGAGTTGGGTGATCGTtttctgtgggtttgtcacctTAAGAGACACCTTTGAAATTacataatattaaatatttatcagtgcagctttaaattatACTTCAACttatataatatgtattattattct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235734 lncRNA downstream 106553 10088282 ~ 10088523 (-) True G174143
TU235726 lncRNA downstream 149722 10044632 ~ 10045354 (-) True G174139
TU235681 lncRNA downstream 292069 9861001 ~ 9903007 (-) False grin1a
TU235693 lncRNA downstream 398105 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 398105 9795843 ~ 9796971 (-) False G174116
TU235798 lncRNA upstream 47370 10331327 ~ 10335010 (-) False G174196
TU235799 lncRNA upstream 47370 10331327 ~ 10335010 (-) True G174196
XR_005636756.1 lncRNA upstream 81567 10365524 ~ 10367785 (-) True LOC120545915
TU235813 lncRNA upstream 94637 10378594 ~ 10378853 (-) True G174210
TU235814 lncRNA upstream 94999 10378956 ~ 10379628 (-) False adra1ab
XM_039779364.1 mRNA downstream 45073 10143070 ~ 10150003 (-) True barhl1b
XM_039779363.1 mRNA downstream 86787 10097251 ~ 10108289 (-) True gtf3c4
XM_039778853.1 mRNA downstream 195509 9993598 ~ 9999567 (-) True gfi1b
XM_039780816.1 mRNA downstream 211051 9972694 ~ 9984025 (-) True gtf3c5
XM_039778921.1 mRNA downstream 223226 9966088 ~ 9971850 (-) True LOC120544999
XM_039778871.1 mRNA upstream 95138 10379095 ~ 10395744 (-) True adra1ab
XM_039780667.1 mRNA upstream 488900 10772857 ~ 10824728 (-) True si:ch211-127i16.2
XM_039779876.1 mRNA upstream 629757 10913714 ~ 11140925 (-) False vav2
XM_039779875.1 mRNA upstream 629757 10913714 ~ 11140925 (-) False vav2
XM_039779869.1 mRNA upstream 629757 10913714 ~ 11140925 (-) False vav2
TU235744 other downstream 86793 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 320731 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 351577 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 1123868 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1561177 8625482 ~ 8633899 (-) False LOC120545754
TU235941 other upstream 877283 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2072971 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2106598 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4196505 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 4300742 14584699 ~ 14589020 (-) False G174827

Expression Profile