RNA id: TU235799


Basic Information

Item Value
RNA id TU235799
length 3655
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G174196
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 10331327 ~ 10335010 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttttgttgtttttttttacatcaccaTCTGTGGGATTTGACACTTTATCCATAATGAGCAAGCATCCCAGAAACCCCACAGCCACCAAGACAAATACCATCACACAGTTTCACTTTCACAAGGGGGAAAGGCTTACAGAGGGGGACGGACGGACGAGAGGGTTCAGGGGGGGCAAGGGAGGTGTTCAACAGCATCAACAACCTCAGAATGGAAGGAAGCTCCTCTCAGCCTGCAGCACGTTGCGTACATACATATCACTCATATATCATTAGCATAATATGGCATAGAAAAAGCATCCAAGCTGACAAGAGCATTAAAGGAGTAcaagtgtgtgttttagtgtgtgtacATCGAGGAGGCATGGGACACGGCGAGGATGCCAGCGTTGAAAGCTGTTTTTTGTCAATTCTTCAGGCATGGATGCTGCATCACAGCAACGGCTGTTTGATGAGTGtgtttgaaagtgtgtgtgcgtttcttCTATAGTCTGTTGGGTGCTGTCAACTAAGTTCTTTTTAAGCAGCAGGGGATTCTGGATTCCACGCAACTTAGCACAGGATTATGTAGAAATGGTGTTCTCACAGAATAATTAtaaaagtgagtgtgtgtgtgtctcaatagCACCAGGTCAGGACGGGTTGCTATTAGCAACCTCCAATCTGACAAGCGTTGCCATGACAAACAAAAAAGCAGAACCCTGTGAGGGTGGAGAGGTCTGTCGCCTCGGCAACAGCCAGAAACAACAAAAGagccagagagggagggaggtgaagaatatatatgagagagagagagagagagagagagagagagagagagagagaggaagagaaaggcgGATAAAGACAAACTGAAAGGAAGGAGTGACATGGAAAATACTAAAATACAAGGAGCAAACTGTCTCACAACAGCTACGCTTGCTGCCAATTAGTATTCGTGTTGGGGACTTCTGTTATGGGACATTCTCCCATCTCTTCTACCACATACTTTCCCACCTGACGTAACAGGAGGGAGTCatacagtgtagtgtgtctatAAGAAGAGAGGGCTACAAGTACCAATGCAATGTTAATTAggacgaaaaaaaaaagaagaggcaACAGTAGGCCACTGTGAATGGAAGAAATACTCGTCAGACACACGGGGCCAAATTCCGCACGGCTTTGTGTGATGTGTGCAAGTTGCTGTGGAGATGGAGTTTCCATTTCCCATTCCCATCTTGTCTCATCTTTGAATGTTTCAGACCCATTTCATTCGCCCCGCTTTTGGATTCCTTAAATACATATACCATTCGTAACGCTGACAGACTTCTATATGCTTCCAGTTAGACCAGAGGAGAGAAAGCCTGAAAACTGGGTTTTGAAAGTACAAACACAGAGGTGATGTAGTGCGTATGTATCTACATTATATGCACGTGTGAGACCAGTTGAATAAGCTTAAATGTCACAGCTAACTAAAGCTAACGCTATAGCTCTTATGTGCGGCTACAGCAACAAGTAGGTCTTCGGTGTTAATATGAATGCAGTACGGTCTACATTAGACTAGTCTAAATAACTGAAGACCAGTCTAAAGCATAGACTAGTCTTACTCTACACTTATGTAACTGGTCCTTATGTCAGGGTGAGCTTGCTGCTCCGTGTTGAGTCATGGGGAAGAAAAAGGCTGCAGAGAGATGACTGGTGGCCAAGACCTCGTTGACATAACAACTAACACAGGAAATCAGTTGCTTGGCTTAATGAAAACCAgatcatgcaaaaaaaaaaagaaaaaaagaaagaaaagggaggTATGAGTGCTCAGCACAGCCCGGAGCAATGTCACGTCAACAACAGTAAGGAGCGCTGTACAGGAGCCTGCTGTGCGTGTCCCATCCATCACATCAACACTGCACACTAGTCAGAAATACATTAGCTCATTTCTACTTCCAAGCGTAAATCAATAGTGCTGAGCCCTTAGGCACCTAGTTACAGAAAGACACTAAAAAGCAGTTGGACAACAAGTTTAAAAACTCTAAAACATTAGAACATTTTTAAGATAATCGAGCATTTTCCGTCTTTACAGGGGCTCTACCGGCAGAATAGGCCCTATGAAAGCGCAAAATCTGGCACCTTTGAAATCGGTTTATCCTGGCTATTTTacatcttcctcttttttttttttatcttacatcCTTCACTTACCTcaataagaacaacaaaacaAGAACAAACCAAACTATCAGTACAACTTCTGTGGGTTCAGGCACATAAAGAgtagaaaagaaagagggattTTGATGAGTATAAAACAGTCACATTTGGAGGAGGGGAAAACATTCTGTGTGTAAATGCACTGGTTGGTGATGGGACGGTTATCAGTTAACAGCCGTCAATCGAAAACCTTTATGGACCTTTAGGATTCACAGGAACGCAAACAAAACCGGAAAAATATGTAGCTGCAGAGTGAATGGCACCTTCCCCGCACCGCTAAAAGTTGTCTAATAGGACGGCATTAAGAGACAATAAGGCAAGGAAAGGGTGAGTTTGAAGTGACCGTGAGTACAACTTTCTCTTTCCTCCCTAAATCTTCCCTTCAACTCTCCCACTTAACGTTGGCCAAGATCGCTCAGAGATGAGGCATTACGCTTTATTTACTACATGCCAAAGCTCCTTCTGCTAAACAAGCTCTAAGGCAGCCGCCAAATATGGAATACGGTTATCAACTTATGTACCTTAGCAAAGCCACAGGTGGGAAAGCATGAGACGAGAGCCAGTGCAGCCAGAGTCTATAATCCTAATAAAAGATTGTGGTGTTGTTCAATTTTTCAAACCTTAAGGACGTCCTCAGGGCGAATAATCAATGGTATATTGATTACAGCAGTATGTGACGGATGGCGATGCACTGGAAAGCGAGGCAGTTGAAATGCAACATAATACAAACCACAGACAGCTTGAAAGAAGTATTCTATTCTTGTCAGCTGAATAAACTGTAACAGGGTTCAATTTCAAGCAACCTACAAATTGGCCTTTTTTCCAAGAAAAGCAAGAAAAGAAGGTAAGAAATGGTTTTGTACCCATGCGCCATTTAAACTACTCCCCAAAATGAAAAGGAAGAATGGAAATGCAATAGACATCCTGCATGAAAATGTTCCTCTTCTCTTAACGGTGTTAATTCAATTTAGTCACAACTTGACGGCTCTATTAAAACAACAGcaaaacaaacatcaaaaagatacATGGCAGGGAGAAAGTacggtataaaaaaaaaaaataatgcagtCAAAAGTGCTCAAATAAGGagtgttgtcatttttttttttttttttaatcatatgaGGCAgacccttttttttcctttttctttttctctaacCGTGTCCTCTAGGATGGGGTTTTGGGGAGGAGGAGCGTGGGCAGGTGAAAGGCGGCGAAGGAGGAGGTGAAAGACGGAGGCTGATGGATGGCCCGGTCAGGTGCTGCGAAGGGTTGCGGCTCCCGGTGTCGTGACGTGGTTTCTCCACCCTTCAGCTCTCGTCGGCCGTCCGTCCTCCGATCTTCGTTTCCTCCCTGGCGGCCGAGGGCAGAGCTCTAACCCAGGCTGGTGATGTTGGCCCTGCCGCCAGGCGGCGCCACGATGCGCTGGGTGTTCCGGCGAGGAATGTTGTCGTCAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235760 lncRNA downstream 47290 10243727 ~ 10284037 (-) False G174166
TU235759 lncRNA downstream 47370 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA downstream 92053 10236745 ~ 10239274 (-) True G174168
TU235734 lncRNA downstream 242804 10088282 ~ 10088523 (-) True G174143
TU235726 lncRNA downstream 285973 10044632 ~ 10045354 (-) True G174139
XR_005636756.1 lncRNA upstream 30514 10365524 ~ 10367785 (-) True LOC120545915
TU235813 lncRNA upstream 43584 10378594 ~ 10378853 (-) True G174210
TU235814 lncRNA upstream 43946 10378956 ~ 10379628 (-) False adra1ab
TU235837 lncRNA upstream 167967 10502977 ~ 10504576 (-) True G174233
TU235854 lncRNA upstream 175576 10510586 ~ 10513636 (-) True G174245
XM_039779917.1 mRNA downstream 104946 10201066 ~ 10226381 (-) False gsna
XM_039779918.1 mRNA downstream 104948 10201066 ~ 10226379 (-) True gsna
XM_039779364.1 mRNA downstream 181324 10143070 ~ 10150003 (-) True barhl1b
XM_039779363.1 mRNA downstream 223038 10097251 ~ 10108289 (-) True gtf3c4
XM_039778853.1 mRNA downstream 331760 9993598 ~ 9999567 (-) True gfi1b
XM_039778871.1 mRNA upstream 44085 10379095 ~ 10395744 (-) True adra1ab
XM_039780667.1 mRNA upstream 437847 10772857 ~ 10824728 (-) True si:ch211-127i16.2
XM_039779876.1 mRNA upstream 578704 10913714 ~ 11140925 (-) False vav2
XM_039779875.1 mRNA upstream 578704 10913714 ~ 11140925 (-) False vav2
XM_039779869.1 mRNA upstream 578704 10913714 ~ 11140925 (-) False vav2
TU235744 other downstream 223044 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 456982 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 487828 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 1260119 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1697428 8625482 ~ 8633899 (-) False LOC120545754
TU235941 other upstream 826230 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2021918 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2055545 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4145452 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 4249689 14584699 ~ 14589020 (-) False G174827

Expression Profile