RNA id: TU235856


Basic Information

Item Value
RNA id TU235856
length 1495
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G174246
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 10516654 ~ 10547971 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaagaaatttgatacaaaaaaaaaaaaaaaaaaaaatcaccatttGACTTTGTAATAGAAGAAAAAGACATGAAATGTGAGCGGAAATTGAGGAAACAGTtgcacacacattaaacacaggcctgaattacacacatgctcaggacctatacaTGTAACTACCTCCTTGGAGGAGCGCAACGAGCAGTTGgaggttcagtgccttgctcaaggacaccttggtagtgcccaggaggtgaactggcacctctccagctaccaatccacactccgTTTTTTCGGTCCGTACGTGGACTTGAACCCCCAAATCCTCACAGACTGAGCTACTAACACCCACAATACCTCATTTGACCACAGTACACACAGCTATAGACTTGTGCTGTGTCTGACAATATTCCGTGTAGGCAGCAGTAAAGGCCATAAACAAACATGACTGTATCTACTTTATCCATCATTGCTCAGCTTTTCTAAAATCTACTTCTTGCTCACCAAGCACCACTGTTGCCAACTGAGCAACTGTTTCACCAGATTTTGTGACTTTTCCAGACTCCTTTTGGTGACTAAACATCTCCCGAGAGCCAAGCAACAAATAGGGTGACATTTTCGGCTGGCATCAGCTACTTTCTTGCTCTTGCTCACATAACGCTGCTGGCTCACATAACAGGTTGGTTATGTGAGTTGAGCAGAGTTGCCAGATTTGGTCGATCAATCAGCAGCGTGGCTGAAACATGAATGAGCTGCTCCTGCAAAAAGCTTCATGTAGCTATAGGCTAACGTTGGCAAGTTAACAGGCTGGGCGAAGTAATGGTATTGAGCATCTCCAGTTGCTTCCGGCTCCGGAATCCACTTTCCAAGGCTTTTGGTTGTTTATCCGTCCATTTTTGCCACAAGTGCAGTGTCCAAGTCTGATTCTTCGGCCTCTTCCTTCTTGTTTGTGGCTCTGCGATGTCcgtattatctgccacgctaaCGTTAGCGGAGCTAGCTGAACCATTGCTGTCGCTACctacagctagctagctgcggccCTGCAGCTACAGTCTATATGCTGCGACCTCGCTGGTGGCATGTTTCGAGAATAAATGttctttttacacattttgttcCCTCAGCCAACAGTTccatttgttattttgttatctTTTAGTCTGTCATGAatgtatagacctttttcacggcagacatgttgacatagtaggaaaagcacaggtgtactcaaaaccattaatgatggctgcattccactggTATTGCTGTCTCCTGGTatatgctgactcactgaaatagttTACTCACACTTGATGGAatggagccatcgttaaggttatcaatttcagctgtgcttttcctactatgacaagtcaaaatgtctgctgtgaaaaaaaagttcCATTATATAACAGtggtgacacaaatgtcacaccCGATTAATTTCCGCTTTCCGCCCTCACTTGGCCTTTCCAAAGATCCTTTAAACCATCTCCGACCTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235854 lncRNA downstream 3018 10510586 ~ 10513636 (-) True G174245
TU235837 lncRNA downstream 12078 10502977 ~ 10504576 (-) True G174233
TU235814 lncRNA downstream 137026 10378956 ~ 10379628 (-) False adra1ab
TU235813 lncRNA downstream 137801 10378594 ~ 10378853 (-) True G174210
XR_005636756.1 lncRNA downstream 148869 10365524 ~ 10367785 (-) True LOC120545915
TU235937 lncRNA upstream 629542 11177513 ~ 11179509 (-) True G174309
TU235959 lncRNA upstream 1073476 11621447 ~ 11621660 (-) True G174324
TU235960 lncRNA upstream 1111465 11659436 ~ 11659824 (-) True G174325
TU235962 lncRNA upstream 1112554 11660525 ~ 11660862 (-) True G174327
TU235970 lncRNA upstream 1198100 11746071 ~ 11746420 (-) True G174335
XM_039778871.1 mRNA downstream 120910 10379095 ~ 10395744 (-) True adra1ab
XM_039779917.1 mRNA downstream 290273 10201066 ~ 10226381 (-) False gsna
XM_039779918.1 mRNA downstream 290275 10201066 ~ 10226379 (-) True gsna
XM_039779364.1 mRNA downstream 366651 10143070 ~ 10150003 (-) True barhl1b
XM_039779363.1 mRNA downstream 408365 10097251 ~ 10108289 (-) True gtf3c4
XM_039780667.1 mRNA upstream 224886 10772857 ~ 10824728 (-) True si:ch211-127i16.2
XM_039779876.1 mRNA upstream 365743 10913714 ~ 11140925 (-) False vav2
XM_039779875.1 mRNA upstream 365743 10913714 ~ 11140925 (-) False vav2
XM_039779869.1 mRNA upstream 365743 10913714 ~ 11140925 (-) False vav2
XM_039779871.1 mRNA upstream 365743 10913714 ~ 11140925 (-) False vav2
TU235744 other downstream 408371 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 642309 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 673155 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 1445446 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1882755 8625482 ~ 8633899 (-) False LOC120545754
TU235941 other upstream 613269 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 1808957 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 1842584 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 3932491 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 4036728 14584699 ~ 14589020 (-) False G174827

Expression Profile