RNA id: TU236363


Basic Information

Item Value
RNA id TU236363
length 1574
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G174629
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 14135438 ~ 14137176 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGGGGCTGTCTTCGCTGTCAGTGTGAGTCTAGCTGGCAGGCTGTTGCTCTTCATCTTATCTGCTGGGGAGATCTTGGTTTGCCGCATGCCCGTCCTCACGGGCCCGAGACTGTTGCTGGAAGCGTTGCTGGGGCGGGCAATAACCACAGGCTGCTCCTTCCTCTgtttcttcagctcctcctccctctgctgAGCTGCTCGGATCTCCTCTTCGATCATGGACAGAGTTCGCTGCTTGTTGGAGCGCAGGCGGAACGGCCCGCTGGCGGCCTCCGCGTCGGGGCCTCGTGCTGCTGCGGCCGTGCTGCGCAGTTCAGCCGCCTCGGAGTATTTACTGAAGTAGCTGAACTCTGGTTTCTCCGGGCTTGGGGGAGAAGGGGGACGGTAGACTGGGGTCGGCCTGGGAACTGGAGCTGCCGCGGCAGAGGCAGGGGCCGGAGCAGGGGCGGAAGAGGCGAGGGCTCTGGCGTAAGAGGACTGGATTTTGATCCTGGGGCCTCCATCTCTGGGCCTCTGGGGTGGCGAGATGGGCTGAGAAGGCGGCGGAGAAGGCGTCTGGAGCTGTGTTCGCTGTGCTGGACTGgagggctgctgctgctgctgctgctgctgcagagccTGTTGTGATTCTGAAGGCTTCTCTTGGGAAACGACTCTTACTTCTGGCCCTCTGTCTGGCTGAGGGGACAGGCTGGATGGAGCAGGACTGGTGGACACAGGCGATTGGAGGCTGGGAGCTCCGCTCGAAGacacaggagaggaggaaactGGCACTGGGCTACTTGAAGAAGCCGAGGATGGAGACACAGGGGCGCTCAGTTGTGAAGAATTCAAGTCCGAAGGCTGCCACTCCTCTCCATCCTGAGCTGCCAGGGCATTTTGGATAGCATTTTGGACAAGTACCCCTGCGTGGTAGTCCAGCTCCTCTTCTGTTGGACTGCCACTGGTCTGCCCATTGACTGGCGTGGTGGGCTGGGGGGTAGGTGGTGACACCGGGGTAAGTGGCAACGGGGTAGGTGGTAGCGAAGCCCCACTGTCGGAAATGTTATCCAAGCTAAACACAGTAGTGTCCTGAGAACGGACAGATGACTCGTCTAATCCTGAGTCGGACTCCTCTGGGTGAAAACCTGGATGGAAATGGTGCTTCCCTTCCTCCTCGTCAGGCAGGATTGTCATTACAGCTCGTGCACGAGTAAATTCTGCTGCAGTTCCTTCATCACACCAGGCCACGTGACCCTCCCCGGTTTCTGCAACGATGTCTCCGCTCCCCTGGCTGCCTCTAGTCATGGATTTCGAAAAGGGTTTGGCGGAGTAGATGTGAGGAGCTATGTCCCTCTTGGTTGCCTCCCCTTGCAGAAACTGCCTTCTGGCAGACGAGAAGTTGATCTGCTCCTCCACGATGTCCTCCTTCCTGTTTAGATctgggtcaaaggtcaccaTTGTGGGAGGACCTGATACCTGGGGCctgtgagTATGTATAAGTATGTTTCTGCTGTTTCCTCTCCTGGTATTTCTTGAGGGACTCAAGCTGCTCTGCATCCAGCTGTTCTTCCAAAGGAaccttgaatgaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236361 lncRNA downstream 184 14132855 ~ 14135254 (-) True G174627
TU236331 lncRNA downstream 178238 13955268 ~ 13957200 (-) True G174606
TU236318 lncRNA downstream 262293 13872543 ~ 13873145 (-) True G174593
TU236315 lncRNA downstream 271441 13859952 ~ 13863997 (-) True G174590
TU236317 lncRNA downstream 280711 13854315 ~ 13854727 (-) True G174592
TU236379 lncRNA upstream 22896 14160072 ~ 14161069 (-) False G174644
TU236378 lncRNA upstream 22943 14160119 ~ 14161164 (-) True G174644
TU236657 lncRNA upstream 442404 14579580 ~ 14584620 (-) True G174828
TU236662 lncRNA upstream 499094 14636270 ~ 14639963 (-) True G174832
TU236663 lncRNA upstream 499094 14636270 ~ 14661206 (-) False G174832
XM_039780696.1 mRNA downstream 114987 13959302 ~ 14020451 (-) True plppr1
XM_039780695.1 mRNA downstream 114988 13960706 ~ 14020450 (-) False plppr1
XM_039780694.1 mRNA downstream 114990 13959302 ~ 14020448 (-) False plppr1
XM_039780098.1 mRNA downstream 428510 13671663 ~ 13706928 (-) False LOC120545595
XM_039780097.1 mRNA downstream 428510 13688787 ~ 13706928 (-) False LOC120545595
XM_039780679.1 mRNA upstream 24486 14161662 ~ 14179566 (-) False snx30
XM_039780680.1 mRNA upstream 28550 14165726 ~ 14179564 (-) False snx30
XM_039780678.1 mRNA upstream 28550 14165726 ~ 14179564 (-) True snx30
XM_039780011.1 mRNA upstream 52489 14189665 ~ 14197516 (-) True LOC120545561
XM_039779784.1 mRNA upstream 73698 14210874 ~ 14233346 (-) True LOC120545456
TU236126 other downstream 1743954 12390555 ~ 12391484 (-) True G174442
TU236123 other downstream 1777548 12356928 ~ 12357890 (-) True G174439
TU235941 other downstream 2971083 11161240 ~ 11164355 (-) False LOC120545042
TU235744 other downstream 4027155 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 4261093 9861001 ~ 9874345 (-) False grin1a
TU236617 other upstream 343286 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 447523 14584699 ~ 14589020 (-) False G174827
TU236653 other upstream 447523 14584699 ~ 14589020 (-) True G174827
TU236655 other upstream 447523 14584699 ~ 14589020 (-) False G174827
TU236877 other upstream 1513561 15650737 ~ 15654486 (-) True G175000

Expression Profile