RNA id: TU236657


Basic Information

Item Value
RNA id TU236657
length 5041
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G174828
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 14579580 ~ 14584620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagtgttttacatttgtttgcTTTAATAATGAGTGTAATAATATAATGATAGTGTTATTTATAGAACTTAAACAAGTATTGTGGTTACATAGTGCTGATGAACTACGCCCAAAAAGAAATTATTAGCATCACTAGATGCaaccatttttgtgtgttgGGAATATTTTTGACTTTCCCCATAGTGACTGAACTCAAAAACTGCCATCCATTTCACACACGGTTAAGCCAGGGATTTTAACAATGTTTGACTAGTCCTTAACTTTTCATGGGGACTTTGATTGCTCCTTACTGAGTAACCCAGTTTCTCTCGGGAGTGTAGCCAGTATtaagtgttttttgttgttgttgctgtagtGTCTGTTTCTTTTGTACTCTGACTAAATTACTAACTTTTATGTGACATAACTTTTTAAATAATCTTTCGTGTGTTGTTGGGTTACACAATAATGAATTAAGTCAGACATGTATCGGCACGCTGCGTGGACATATTGAGCGTTGATATGCACATTGAAATTTTTATGAAGGTCTAATCGTGTGGAAACACTTTAATCTCACATTTTTGAGGCTGTGAAATGAAAAATTGTGTGCACAAACGGGTGTGTTGGGCGCACTGAGCATACACTGATTGTAAGTGGCTGCACAGTTTGTCATTCTCTGTAGGAAGTGATCAGTCAgacgagataaaaaaaaaagcacctttTGACGAGTTTTTGGAAATATACGCCTCATTTTATTCAAGAGACAAAAGTAATCAATTTTAGCTAACCAAGTCCTCTGTTAACAACCAAAAATAAGACTACACTTTTGATTTTCAAATCTACTAAACACAACAATCCGTCTTGAGTCATCTAAAGGTTACAGGTGACCCTCCCTGGTCCTGAAAGAAAAAATGTCTTGAGTGCcaagagaaaacaaagaggagaggagaatgaACTATGTCAAGAACCCGAAACTAAATGTGTACGCACTGCGCACACCTTCGCTGATCctgttctgcttcattttaaAATTCCTCTCCTGTCATTTATGTTTGACCTGGTACAGTTAAATCCACTCACTGTCGGAATCAATCTTTACTATTAATTCACAGCAAAAATACCTTTACTGCACATACACCTTTTTTTCCGGCTATGTGTTGTATTTAAGCACTGTATAAATGCCACAGATTTGTATTCATAATGTGTCCTCTGGAATGATTTTGCACATTATTGCTTGAAAAGTAAAGATGCAACGTTGATGCAATGATTTGCAGCTCTGCAGGATACAACACGATAGACAAGGCTAGAACAACTTTATTTCAATACTTACTTAAGCAGTTTAATATCAGTTTGTTTACAGCTGAAGTGTCATTAGTGTTTGACAAGTTGGTAATAAGTGTCTTTAATGTAATCCAATTATTAAGAATAATACAAAGGAACAGGTGTGTCACTTTTAAAACCATTACTAATGTTATTCTGCTATAGGGTATTAACACTACAGACagctgtcagtctgtgtgtgttatgcatAGACCCAAACATGCCTGTTAAGCCTCTTTCTGGGATCCAGTGGCACCGTAGTATCAGCTTCAATGTTTACTAAACTCAGCAGGAACCGAGACTGAAAAATTACTGATTTGCAATCATGAACACTGACACGCTAACAATCTTTATCAGAGAAAAGGGGAAATATAGTTACAAGGAAAATAAAAGAATTGCCACGAGGGTGATACTATGTCAACACCTGCTTTTCTATTATGAGCACACGTTGCATGTTTGTTTTACAGGTGGAGCAAAATAaactgtagtaggctactgtactTTAGAAGTTGGTGTTATGTGATATAGAATGGTAGGTTTAGTAGCCATGTGGAGTACTATCTGTCTGTGAACAGAGTTGTATCATGCTTTCTAAAGGAGCTTTCTAAAGTATAATAAAATAACCCTTGTGATGTCATTGTGGAGTATTTTGGCTGAATTCCTTAtgcagaaagccttttttttttttttttttttttttttttatacaaacttGAGCATGtgggcctttaaaaaaaatttgtacCTACTTGGTAGACaaaagaaaatttggctagccggatcaactgcgaccaagaaaatgataacTCAGTGCTGCCCCCCATCAGTTTGCACAGTTCTTTAATCCATCTCTTGTGAGTCTCCCAACTTTGTGGAAGTTTATGGTGCAATAATCTTTTGTGAAGATCAGCTTGTTGTGGGTGGACAGACAGAAGAAAGCTTTCTCACCAGCCCAGGAGGATGAGGCAGTATACGAATACACACCCTGATTGATCATTGATCATCTTTTTGTGAGTCATTGCATTCTATGTGGCCATTTAATGGACACTAGAGTGAAACACAACACATCTTGAAATCCTCTTTTAGAAATTAGCTCAAATGCAGAAGCCAACAAATgcaagtttttgtctttttgtgtgtttcattgttaCCATGGGTGAAGAATTAAAGTAAGACTAGTATGGTAAATGTGTATACAATGTACAGATGATTGTATTAACCAAAAGCCCAGGCTTCTCATATTTGCTAATCAGCAGGATTTTCCATTTCAGCTGACATGGACGTTAAATGTACAATTTCTCGAGTTGATTCAACACAAGTATAGTGACAGTATTTCCACTTGAAGATTTTCTAGTTTCCATTCTTGTTTTTCCATCTGTAGGAGCTGATGCAGCAGCATAAAAACTGCTAACCTTTCAATGCATTCAACAGGTTCTGCTGGAGAACTGCGTCGGGATTTCTTGTAGGCCAACTTGACAACAAAAGAACTAGCAGGGGCTCTAGAGAGACAATTGTTCACTACAGTGTCTCCTTGTTTGAGATGTTCAGCCAGTTTGAACAAAAGTAGTAATGTTGTTAGACAAGGTGCTGAAAGAAACCAACCTCTCAGACCAGTCGGGCAGCATTGTCTGTGTATGTagacagagcagacagggaggCAAAGAAAGCAAAGTATCACAGTGAAATGTAacctgtctgcatgtgtgtttgaacAGTGTCCATAATGGCTTCTGGTCGCAGATGATAAAACACATTAATTTGCTTGTCTAAAATGTGAACATTCTCGCTCTAGAGGCCGTATTATAATCTTTCTGCTGAGTTACATTTAACCTCACTGCACTGCTGTCATAATCACAGATACTTCCACTTAtcaaataaacttttatttaaacTATTATTTTCTTTACATGCACTTCTGCAGTCAAATCTGAATTTTGTAATATTGAGTTGAGGAAAAGGACTTAGTCATCTGTTGTTAGGAAACAGTGCACATTTAATAAACAGCATTTTTATCACAGAGCAGTAACAACAATATTGATAACCTCAGGAGGTAGGACATCTTTGAAGGACCTACAAAATTGCTCATAACTGTAAAGTGCATAATAATACAGTAAAGGactatttacattataatcGGGGGGAAAAGCGTCCTTAAAGATGaggacaattaaaaaaaatagaggtCATCATCATTTGCAGAATGTAAAAGAGCTAACTTCAACTcaatatcatttttttcaatttattaATGAACAATGTAGGGTTTCTCTCTGTTTCACTCTTACAACAATGCAGAATTCTTCACTTTCTTTCCATTTTCCCATCTTTGCCATTACTGCACTGCTTGAAGCATACACCTGCCCTATATCATAATGATGTTAGAATGAATCATAACCCAGCTAAGGCCATAATGAGTCTCATCTGTAACTGCATTAAACTGCAGCCCTGGCTCTGTCACTTGCAACACTATTACAGATGTATGCCTTCAATTGTTCCTGATGAAACACACTAATGCTCAAAGAGGCTTTTAAAGAGATTCTGCTTCACTTGGTAGTAAATTATAGAATATCTCTTCGTACCACTGAAATATTCCTACAATATTCCTTCATGGTCTCAAAATAACTTAACTTTATGAGTAGCCTCAGTAGGGATATGTCctatgtctatatatatatatatatatatattactataaTACTCCAGAATattatagatagatacagtttttttaattaataccaTTGCTTCTTTCTAGAATATGTCCCACTCTTAGTcctttttgcaaatattcatgtcCGTCTTTAAGTCGTTTTTCCTTCATGTGGGTATCTTTGTGTGTCTCCATGGAGATCCAGATGTGGTGCATGTGCTTATAGGTCGGCATCATAGGGTCTGCCGCTGTATGAGGGGTTGACTGACCGGGTTGGGTTTCTCTTGGCCCGTGGGAAGGACACATCCTCATCCATGGAGTCCTTTGAGTATGGGACGCTGCTGCTGACGCTGCTCCTGGCCCGGTGCAGGCTGGGCACTTCAACTCGTCTCTGCGGTTGCCTTTGGTGGCTGAACCGGGGCCCCGTGACCTCCTCAATCCGCCTCTCTCCTCGGTTCTTTCCTCCGCAGCAACGGCAGATCCCGACGGCCATGACGATGCCGGCAAGGATTTCAAATATCCCTCCGATGTAGCCCAGGATGATGCAGTAGCCGACACTCACAGCTATGGTAGGGCTGACCGTTGTGACGGTATTGATGATGCGGGTGTACCAGGCGATTGGTATGATGGTCATGACGCCTGAGAGGAAGAACAACAGTCCGCCCAGCCCGGCCACTACCCAGTTAGGCCTGTCGGTCCAGCAGCGGACCCCCGGGATGGCCACGCACAATCCGATTATAGTCACGATGAGGGAGGCCAACATCAAACCCTGAGCGACCTGGATGATCTGGTTGCTGAAATATAAAGTGTCCTGCAGACCGCACGTCACTCCCGTGACGATTGTAGAGCCCGAGCAGATTTGCCAGATGCCTTGCTCGATGAAGTTAGAGGGGGGGTTGTTGGGGAGGTTGTTGAGGGTCCTCCAGTTCGGGGCCGCGGTGGCGATCAGGTTCAGGACGAAGCCGCATGGAGCCAAAACCATCCCGAAGATCAGGATGCCCGGAGTGCGCATTGATGTCCGGATCCACTCCTGAGATTCTAGCCTCGGcatggttgctgctgctgctgctgttgtggaTGTGTGTTCCTAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236378 lncRNA downstream 418416 14160119 ~ 14161164 (-) True G174644
TU236379 lncRNA downstream 418511 14160072 ~ 14161069 (-) False G174644
TU236363 lncRNA downstream 442404 14135438 ~ 14137176 (-) True G174629
TU236361 lncRNA downstream 444326 14132855 ~ 14135254 (-) True G174627
TU236331 lncRNA downstream 622380 13955268 ~ 13957200 (-) True G174606
TU236662 lncRNA upstream 51650 14636270 ~ 14639963 (-) True G174832
TU236663 lncRNA upstream 51650 14636270 ~ 14661206 (-) False G174832
TU236684 lncRNA upstream 180663 14765283 ~ 14765483 (-) True G174838
TU236730 lncRNA upstream 405149 14989769 ~ 14989973 (-) True G174869
TU236743 lncRNA upstream 526823 15111443 ~ 15111877 (-) False G174881
XM_039779904.1 mRNA downstream 5556 14492130 ~ 14574024 (-) True tnksa
XM_039779905.1 mRNA downstream 5556 14492736 ~ 14574024 (-) False tnksa
XM_039779892.1 mRNA downstream 156267 14359516 ~ 14423313 (-) False si:dkey-247m21.3
XM_039779891.1 mRNA downstream 156267 14359516 ~ 14423313 (-) True si:dkey-247m21.3
XM_039778844.1 mRNA downstream 238149 14329227 ~ 14341431 (-) False slc26a1
XM_039780594.1 mRNA upstream 7668 14592288 ~ 14624902 (-) False si:dkey-88l16.3
XM_039780593.1 mRNA upstream 7668 14592288 ~ 14624902 (-) True si:dkey-88l16.3
XM_039778806.1 mRNA upstream 47352 14631972 ~ 14635570 (-) True LOC120544925
XM_039779625.1 mRNA upstream 55398 14640018 ~ 14747259 (-) False ank1b
XM_039779623.1 mRNA upstream 55398 14640018 ~ 14747259 (-) False ank1b
TU236617 other downstream 96163 14480462 ~ 14483417 (-) True G174799
TU236126 other downstream 2188096 12390555 ~ 12391484 (-) True G174442
TU236123 other downstream 2221690 12356928 ~ 12357890 (-) True G174439
TU235941 other downstream 3415225 11161240 ~ 11164355 (-) False LOC120545042
TU235744 other downstream 4471297 10097376 ~ 10108283 (-) False gtf3c4
TU236652 other upstream 79 14584699 ~ 14589020 (-) False G174827
TU236653 other upstream 79 14584699 ~ 14589020 (-) True G174827
TU236655 other upstream 79 14584699 ~ 14589020 (-) False G174827
TU236877 other upstream 1066117 15650737 ~ 15654486 (-) True G175000
TU236878 other upstream 1066633 15651253 ~ 15654486 (-) False G175000

Expression Profile