RNA id: TU237740



Basic Information


Item Value
RNA id TU237740
length 2143
RNA type TUCP
GC content 0.41
exon number 4
gene id G175640
representative False

Chromosome Information


Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18067132 ~ 18095523 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTGTCAATCACTTTGCAAGATTGGATGTCTCATGTAAACAGTAAGTCTGTTTCTGAAGATGAAACGGCTTCATGAAAATACTCAAGCAAATTTAGTATAAATACTGGattctttatttaaatattgtacatattttaaaacatatttacataaaaGTATACCTGCATTGTTACACTGTAGACATAGTTGTATCtttcatacacacaaacattgcTTGCTGAAAAGAGGACAATCATACCATACAGACTGCAGAAGCACCTTTGAGAACAATTTCACAGGAGAGAAAGATGGGGGCAGACTGTCATTTACATCAAACACTGGGCAACATGACCGAGACGAGACAAGCTTGCAATGACAGGAAAGGCCTCTTTGTTACAGGTCTGGCTATTTGTTAAGGCTGAAATTGTGCTCACCCTCATACTGCAAGTTCACAGCATCATTACCTATCTCACCACCCCTCCTTCTGCATATGGGTAACGTAACATGTGACTGTCACACATAGGGCTATCTTTGAAGACAAGTTCAGAACCTTTATATACCACCAAACAAGAACAGATGACAACTGGGTGATACTGACTTTATAAAATTCTGCTAATAGCCGAGACAGAAATCATGCTGAAAAACAGTGCAGACAGTAGGACaaataatattcaaataatggTGTCCATTAGGTGTATGAGGAAGAAACACCATGCTATCGTAACAGCAGGGCTTACAGAGAAGTGCCCTAatcatgtgtttttatatgGCTTTCCTTCTTTGGTTTCATAAAATCGGTCGTATACTGTGTTGCAACCAGTCACATATAACTTAAACCAAGAATATAATACAGCTTTTGCTTTGATAGAACAACTTTAGGCATAGAAAAGACATTTTAATGTCCCTCTGAACATTTCCACCAAAACACCTGGCCATCACACAAGATTCAGAGCACAAGCGATTTACAGTATTGCTGTATGATGTTTCTAACAACGTGTTGTGTATGACATACACAGACAGTCTTTGGTGCACCTGCTTTAAACTGTAAAGACATTGTCCAAACCACTTGGATGAGCTGTTAGACAAAAGGACAGACTATCAATGAGTAGAACAGTATTATCAaacacacacattacaatcaTGGAGACTATGTTCATATAAATCATGTCAAGTCATATACAGACATCTGagaagcagcaaacaaatgtAAAGGGAAATAAGGAACTGAGAaatcaaaatacacacacacacacacacacacattctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtttaaagtATGGTGTTTAAAGTATACTTACCCCTTACATTCAGACCATTGTCACACGCAAACTGTGCAAAAGGGGACATATAATTGGGGTCGTAGGCAAGGTCGTGAGCTTGCCTTGCAATACTCTGTGCAGTCTGCAGGATGCTGTCATAGTTGGTAGTCTGAAATTATCGAAAGTAAACAGCATTACATTTGAAAGACGTAAAAATAATTTGCACCTATGTTTACATACAACTGGCTACGGTATGTGTAACACCTTGAGTTTTTTGAGCTCCTGAAGAATCATGTAGTCTGGCATGTTGTCAAACAGGCCGTCGGTTGCCGTCAAGATGATGTCACCGAGCTGCACGTCAAAGGAGGAGCTGTCAGCTGCTTCAGGACTGTCACTGAGCACCACCCCTTCAGCTCCAGGAGGAGCGATTGACAGTTGGAAGGGCGTGTTAAAATAGTGCTGTTGCTCATCTGAGCGATGAACCACCTCTCCTCCCCGAACCACCAGGAAACCTGAGTCACCGAGGTTACACGTGTGCAGCCGGTGACTCCGTCGATCCAGAACCACAATACAGGCTGTGCTGCTCCCTACAAAATGAGGAGAGCAAGTCAACAATAAGGTTATGGATAGACTTGACAAGCGAACAGTGAAAAAGAAATGGAGTTCAGTTGTGAAAATGCAAACGTATATCTTTTCAAGTTTGGATAGACAGGCAGAAAATAAGCACGGGCTGAATTTGTTTTTCTAGAGGGGTAGAATGCTGTTCAACCAATACATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU237770 lncRNA upstream 1618 18065221 ~ 18065514 (+) True G175660
TU237762 lncRNA upstream 10819 18054460 ~ 18056313 (+) True G175656
TU237763 lncRNA upstream 10991 18054460 ~ 18056141 (+) False G175656
TU237737 lncRNA upstream 57892 18007739 ~ 18009240 (+) True G175637
TU237623 lncRNA upstream 183301 17876999 ~ 17883831 (+) True G175547
TU237780 lncRNA downstream 12972 18086033 ~ 18094153 (+) True G175666
TU237786 lncRNA downstream 51857 18124918 ~ 18125496 (+) False antxr1b
TU237785 lncRNA downstream 74481 18147542 ~ 18148547 (+) True G175670
TU237805 lncRNA downstream 134713 18207774 ~ 18209059 (+) True G175687
TU237814 lncRNA downstream 157972 18231033 ~ 18234162 (+) True G175695
XM_039780169.1 mRNA upstream 104627 17955092 ~ 17962505 (+) True LOC120545636
XM_039779994.1 mRNA upstream 152450 17908044 ~ 17914682 (+) True ggcx
XM_039779955.1 mRNA upstream 170313 17894989 ~ 17896819 (+) True fam136a
XM_039779948.1 mRNA upstream 192417 17864272 ~ 17874715 (+) True slc20a1b
XM_039780339.1 mRNA upstream 220717 17840135 ~ 17846415 (+) True drg1
XM_039779604.1 mRNA downstream 3007 18076068 ~ 18080451 (+) True LOC120545364
XM_039779603.1 mRNA downstream 29578 18102639 ~ 18106880 (+) True trim69
XM_039779602.1 mRNA downstream 51781 18124842 ~ 18145450 (+) True antxr1b
XM_039779608.1 mRNA downstream 103059 18176120 ~ 18184887 (+) False anxa4
XM_039779606.1 mRNA downstream 103084 18176145 ~ 18184887 (+) True anxa4
XR_005636763.1 other upstream 810668 17241997 ~ 17256464 (+) False lhx6a
XR_005636764.1 other upstream 810668 17241997 ~ 17256464 (+) False lhx6a
TU237402 other upstream 827679 17223616 ~ 17239453 (+) False rbm18
XR_005636698.1 other upstream 1075965 16905657 ~ 16991167 (+) True LOC120545445
TU237295 other upstream 1097555 16904393 ~ 16969577 (+) False LOC120545445
TU237776 other downstream 1971 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other downstream 3178 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other downstream 3178 18076239 ~ 18077502 (+) False LOC120545364
XR_005636603.1 other downstream 463570 18536631 ~ 18548141 (+) True myo1hb
TU238138 other downstream 602983 18676044 ~ 18686728 (+) False srsf9

Expression Profile