RNA id: TU237776


Basic Information

Item Value
RNA id TU237776
length 1866
RNA type TUCP
GC content 0.50
exon number 3
gene id LOC120545364
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18075032 ~ 18080451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACATCGGCGTTCCTGTTCCGCGCAATGAAGCAGGCATCATCTCCGTAGCACATCCCTTTCTTCAGGATCCCTTTGCGAAAGTCTTTACCGAAGCCATAACTGGCGGTGATCAGGCTGTAGTCCCGACCGTCCGTCTGAGAGAGTCCGCCAAGGACAGCCCTGGCTACCAGTCTTCCATAAGACAGTACGGATAACATCCCCTAGCAAGCAGCTACCCCGTCTTGTGAGCACGCACACGCTGTCTCCCCTTTCTCTACCCGACCCCTCTGCCGCCTTCCTACTTTCTTCTGATCAATCCCCGGCTGTCTGTCTTTATCCGTCCATTCGCTCCCGACTGGTCCGCTCCCGTGAAATAGTAACGTGGCCCCAGCAGTTGCTAACTCGGCTAAAACGCCACCGTGCGCACGGACTGATTAACGGTCACTTTATGTCTGAAGTGTACATTTAATAAACGAAGTTCCTCCGCTGGGCTCTCTCCTTCCCGACATGTTTCCACTGTGTGCTGTGCACCGGTCcggaccgttctcttaatacgtCCATGATCCAGACAGAAAGCTGCGATCACATACGGGTGTTTACACTATGACGTCACGGCACACCGACATCATCCAATGACAACGCAGCCCGCAGTTGCTGTCGAGAGCTCAGATAACTGTGACATAACACCACTCGGCAAGTCGGCCCACAGGCGTACGCCGGCGTAGTAAATGGTGCGGACCCACTTAAAAGTAAACTGCGCAGGCTTCGGGTGTGCACTTTCTCCAATGGTTATAACTGGACATAACCGGACGTAACAGTTGGGCCGAACCATCGTTGGCACCATTTTTAGCCGgttattttataatttaacCAGAAAACCAACTGCAAACTCAATTTAAATTGATCAAGTTAATTAATTGTTATAAAATACAGCTCACGGTGAGCTGGGGTCAGAAACCTATGTAGCTTgtatctagctagctacatgtcaGAAACGGAGCTAggttaagctagctagctagttgtagTTTctgtccatatatatatatacactagaaTAAATGCATTGACTTCTTAAAGTAAAACACATCTGAAAATatcacatatttgtttttattggtgGTGTTTGGCTTCATGGTGGTCACCGCATGGACGTCACAGCAAACAGTTCCCACCCCTATTCTAGGCTACAGGGTACTAGCTGCGCCTCAAAACGAGCGTACCCCAGCTAGAAAGAATCCACCCCGAGCCATAACGGAGccgacagagggagagaaaacaaCGACAACAACACATTATCGCCGAATTATCATCTAAGATCACATACAACATTAGTTCACGGGTCATGATGAGGAAGTTGTGTGAGGTGGCTCTTGTGTCCCTTCTTATTGGGTTTCTACTGAACACTGAATCAACATGGGCtaaaaaaagcagcagcagcagcaagaaaaCATCATCTTCTAGCAACAAGGGTGGGACACAATCAAAACCATCCTCTCAGCCAGGATACCCCCGACAGCCACAGAGTCCCAATCGAAACCCCAATCCTTATCCTCCTGGTGGAAGTTACCCAGGAGCAGGCAACACTAATCCAGGAGGAATTCCCAGACAAAATCCACCAAGTTATCCAGGAGCTGGTAGTAACCCCAACCAGTATCCTGGCAGAGCCAATCCTGCAGGTTATCCAAACCAGAACCCCGCAGGTGGATATCCAGCAGCAGGAGGCTACCCAGCAGCAGGTGGCTATCCCAACCAATATCCAGGCAGAGCTGGCAACCCAGGAGGATATCCTAACCAGTACCCAGCTGCAGGAGGCTACCCAGCTGCAGGTGGCTACCCAGCTGCAGGTGGCTACCCAGTCAGAGGAGGAAATACAGGACAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237770 lncRNA upstream 9518 18065221 ~ 18065514 (+) True G175660
TU237762 lncRNA upstream 18719 18054460 ~ 18056313 (+) True G175656
TU237763 lncRNA upstream 18891 18054460 ~ 18056141 (+) False G175656
TU237737 lncRNA upstream 65792 18007739 ~ 18009240 (+) True G175637
TU237625 lncRNA upstream 191201 17876999 ~ 17883831 (+) False G175547
TU237780 lncRNA downstream 8531 18086033 ~ 18094153 (+) True G175666
TU237786 lncRNA downstream 47416 18124918 ~ 18125496 (+) False antxr1b
TU237785 lncRNA downstream 70040 18147542 ~ 18148547 (+) True G175670
TU237805 lncRNA downstream 130272 18207774 ~ 18209059 (+) True G175687
TU237814 lncRNA downstream 153531 18231033 ~ 18234162 (+) True G175695
XM_039780169.1 mRNA upstream 112527 17955092 ~ 17962505 (+) True LOC120545636
XM_039779994.1 mRNA upstream 160350 17908044 ~ 17914682 (+) True ggcx
XM_039779955.1 mRNA upstream 178213 17894989 ~ 17896819 (+) True fam136a
XM_039779948.1 mRNA upstream 200317 17864272 ~ 17874715 (+) True slc20a1b
XM_039780339.1 mRNA upstream 228617 17840135 ~ 17846415 (+) True drg1
XM_039779603.1 mRNA downstream 25137 18102639 ~ 18106880 (+) True trim69
XM_039779602.1 mRNA downstream 47340 18124842 ~ 18145450 (+) True antxr1b
XM_039779608.1 mRNA downstream 98618 18176120 ~ 18184887 (+) False anxa4
XM_039779606.1 mRNA downstream 98643 18176145 ~ 18184887 (+) True anxa4
XM_039779605.1 mRNA downstream 98903 18176405 ~ 18184887 (+) False anxa4
TU237740 other upstream 1971 18067132 ~ 18073061 (+) False G175640
XR_005636763.1 other upstream 818568 17241997 ~ 17256464 (+) False lhx6a
XR_005636764.1 other upstream 818568 17241997 ~ 17256464 (+) False lhx6a
TU237402 other upstream 835579 17223616 ~ 17239453 (+) False rbm18
XR_005636698.1 other upstream 1083865 16905657 ~ 16991167 (+) True LOC120545445
XR_005636603.1 other downstream 459129 18536631 ~ 18548141 (+) True myo1hb
TU238138 other downstream 598542 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 598542 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 598542 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 1302775 19380277 ~ 19387442 (+) False LOC120545529

Expression Profile