RNA id: XM_039780805.1


Basic Information

Item Value
RNA id XM_039780805.1
length 3266
RNA type mRNA
GC content 0.45
exon number 4
gene id lrrc75bb
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18295836 ~ 18328825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCAGTGCATGGACGGATGCAAGCAGAGGGACGACGGCGAGACTGGCCAcacgttgttgttgttattattattattatcattattatgttGATTATAATGCTTCACAGTTCAGAGTAGCCTTGAAACTTTGAAACATAGGCTAGAGGCTATTACAAAGGGGACGCAAGTTAGGCTAAGTGTGATGTTTTGGCTGCATGTTGTAAAATCCATATTACCACCACCGACACATCCTCTCAGGAGTGATGGGTTCTAAGTTGACCAGGCAGAGAAGTCTCGATTTTGAAACAAAAGTGTCCAAGAGAAGACGCCAGAGGAATGACTGCccgggagagagcgagagaagtGGCAGCAGAGACTTCTTGTTTACCTCCTTGATGCTCAAGTCCGACAAGCTCCCGGGGATGCTGCGGAAAACCAACCCCAGCCCATATGTCAGACGGGTGGCTTGGATCCGAGAAATCCAGAGGCTTCTCCGGGAGCAGAAGATGGAGCAAGCAGCCGAAGTGCTCAAACTGCTGAGAAAGgATTTGGGACTCCAGGGAACGTCACTCAATGACATTTTGTATAAGAACGCAGCTTTTCTCAACCTGGTGGACCCCATTTCTCATGAGCTGCTGCTCAGTCTCGCCCGGGACCTGCAGTGTCCAAAAAGGGAGACCGACTCGTTCAAGTCCACCAACAAGATCTGCCGCCGGCTGATTTACCACCTGACCCCTCACTCCAAGTGGACGAGACAGAGCGTGCCCAGAAGGAAGTCTCAGGCCTGCCTGAAGACCACCCTGAAGAAGAAATTATCCGGTGATGTCATCAACCTGTCAGGCATCCCGCTGTCTGGCCGAGACATCCACCGCGTGGCCTTCTACCTCCAGAGCAGCAGTGATGCAGTGTCGGCTGTGGACCTGAGCTTCACCGAGCTGCAGGATGAGAGCTTACGGCTGCTGCTGCCCTCCCTCGGCTGCCTGCCCAAACTGACCATACTAGCTGTCAATGGCAACCGTCTGACAATGGCCATCCTCAAAGACCTGACAGATGCAGTGAAGGATCCTAAAAAGTTCCCCAGCCTGGCATGGGTCGACCTGGGCAACAATGTGGATGTCTTCACCGTGCCGCAGCCGCTGCTTGTGGCCCTGCGGCGCCGCTTCGGTTTGCGCAGTAGCCTCCCCACCATTTATGAGTACAGGGAAGCGCAGGAATTTAGTGGCTACAACCCAAACATGGAGACGTCTGTGGAGGAGCCCAGTCTGTACgaggagggagatggagaggaagatgataaagaggaggaggaggacagactGGAGCTTCAAACCTGGGGCTTTGGAGAAGAAAACATGTCAAAAAATGTGCCACTGCACTTCTGTGGGAGGTGATCGCCCTGAGCTGCTTTCTTTTAGACTGGCTGCCCTTACATCCCTCAGTATCACCTCGCCCTAAGTCTAGCCTCCTCTGTTAGCAGCTGTCATTGTGGCAGATGCTTACAGTGACCCATGTGTTTCTTAAAATAAGTAACCATGTTGTGTGCCCCTCTGGATGCTCCGTCTACTGAAACTTAGCAATGTGATGCAGGCAGCTCTGCGGTTGTACAGATGCTAAGAGTTTATTTATGGATTTAACTGAACACGTTTGCTGTTTTCAAGTGCTTTATGTTTCTAACGTTTAGTTCTCTCCCACCTTGAAGCTTCCCATTATTTGCCACTCCGCTGAAGCAGCTgagggttaagtgccttgcacAATGGCACCTCAACAGTAGCAGTTGAAGAAGGGGGGAGTGTTACTAATTCATTTTCCCCAAGCACATTACCCAACTGGTCTCTCAGACAACTTCACGCCTGCTGCCCCATTTCTGTGAAAAGTCTGAATAAGTAACAAAATATCCAGAAATTCAGAAACTCAACTGCAGTGAGATTTTGTTCACACAAAATATGCTcccagttttttttctgttgggaCACAGTATTACGATAATTCAGGAAATATTTAGAAATAATTGTTACAGTAGGTAATGAAGCAcccattttattttctcttacttactttttttactttacttacaGTAACCTGGCTGAAACTTCAGTAAATGTTGATGCTGCAGTGGGGTTAGCCtgatacacacatgcagacatgcagaaaacacacacagtgtttggACATGAGCTGCAGATGAACTGAATACTGCCTCTATCAGGTCTTGTTCGGCCCCTTTAGTCACAGATGGTGAGCAGAGGATCTATTTTTTTTCAGCAAATAGGACTAGCCCCAGATAATTTTGTCTACTGGTGGTGTACGAACGATTATATTTATGAATCAGACCATAAGCAACAAGAAAGATGCCCACTCTGCTTTTAAAGGCATACCCACAGATAATGAAACGATTACAAACAGCTCTGCTTTTTATCTTTTCTTCTGTGGTGCTACAGCGTGCACATACATCTTTGTTGTGGCATGAGTAAACTGCAACAGTTTCTTTTTGactagtctttttttaaattgtgtagTTCTTatacttttgtattttttgggCATGACTGTTTACTGTAGCGCAATATCAGATCCCACAGACAGAGAGCATTTTAACATGTACATTACAGTAATGTTCCAATAAATTTGAGATTATCTTATAAGGGGATTCAATAAAATGCATGCATGGgagcacaactgcccacaatTTATCCTGCTTACAGATGTTAATGTGGTTTGTTCTCTTTCCACGCTATTATTCAGTATACTATTACAATTTATTTGTGTTTACAGGGACATTAATGAACTGGatgcttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctaattaGAGTGTGCGTCCAGTTTGCATGAGTGTGTTGTGGACATGCAGAGTAAATTACTACCTTTGATcttagaaataaaatgtttactcATTTGCACTTCAAGGACAAATCTGTCCCTGAATGCACAAGCGTTGTTTTCATGGGTTGTTGTTGGTACGAAACAACTCACTGAGTCACCCACAtcctaaaaataaatgttttattttaactttttcattTGATGGATAAATCATCAACCTTCAAACAAATCACTGTCGTGATAAAAATTGGTTGTAAAATGTGCTTAATTTAGATTTTGGCTCATTAAATCATGTCTCTCTTTTAGTAAAGTTAAAGTGATGTTTGCCTGCTGTTGCTTCAACAATAAACATGATTTGAATAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237815 lncRNA upstream 56889 18235236 ~ 18238947 (+) True G175696
TU237814 lncRNA upstream 61674 18231033 ~ 18234162 (+) True G175695
TU237805 lncRNA upstream 86777 18207774 ~ 18209059 (+) True G175687
TU237785 lncRNA upstream 147289 18147542 ~ 18148547 (+) True G175670
TU237786 lncRNA upstream 170340 18124918 ~ 18125496 (+) False antxr1b
TU237929 lncRNA downstream 67738 18396563 ~ 18399371 (+) False tmem120b
TU237927 lncRNA downstream 67779 18396604 ~ 18400446 (+) True tmem120b
TU237928 lncRNA downstream 67779 18396604 ~ 18399371 (+) False tmem120b
TU237930 lncRNA downstream 67779 18396604 ~ 18400446 (+) False tmem120b
TU237937 lncRNA downstream 92704 18421529 ~ 18422678 (+) True G175772
XM_039780705.1 mRNA upstream 25447 18261271 ~ 18270389 (+) True ggt5b
XM_039778869.1 mRNA upstream 96142 18193174 ~ 18199694 (+) True LOC120544962
XM_039779608.1 mRNA upstream 110949 18176120 ~ 18184887 (+) False anxa4
XM_039779606.1 mRNA upstream 110949 18176145 ~ 18184887 (+) True anxa4
XM_039779605.1 mRNA upstream 110949 18176405 ~ 18184887 (+) False anxa4
XM_039779741.1 mRNA downstream 13894 18342719 ~ 18360587 (+) False rnf34b
XM_039779743.1 mRNA downstream 13894 18342719 ~ 18360587 (+) False rnf34b
XM_039779742.1 mRNA downstream 14717 18343542 ~ 18360587 (+) True rnf34b
XM_039779746.1 mRNA downstream 55983 18384808 ~ 18387472 (+) False orai1b
XM_039779745.1 mRNA downstream 56885 18385710 ~ 18387472 (+) False orai1b
TU237776 other upstream 218334 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 218334 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 218334 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 222775 18067132 ~ 18073061 (+) False G175640
XR_005636764.1 other upstream 1039372 17241997 ~ 17256464 (+) False lhx6a
XR_005636603.1 other downstream 207806 18536631 ~ 18548141 (+) True myo1hb
TU238138 other downstream 347219 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 347219 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 347219 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 1051452 19380277 ~ 19387442 (+) False LOC120545529

Expression Profile